New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1158375 =	9 (0.230)	5 (0.140)	5/300	NT	28.9%	coding (282/642 nt)	lpoB	OM lipoprotein stimulator of MrcB transpeptidase
	?	CP009273	1158792 =	16 (0.440)					coding (77/825 nt)	thiK	thiamine kinase

CAGTTTAGGCACCCGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACGTGCTGTACTCCAGCGCCTCTGGCAACGTTAACGCTCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCGCATGCATTGCACCGAAGCCGCATTTATATCTCCGTGACTGGATGGTAGTCGACTATCTGCCCGGCGCGGTAAAAACGTATTTGCCGGATACCAACGAACTGG  >  CP009273/1158561‑1159034                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                   gggTTTAGGCCCACGGAGTACGGCCATAGGCCTTGCCCGCAATGTCGGCGCTCATTCCGTGCTGTACTCCAGCGCCTCTGGCAACGTTAACGCTCCTACCCTACAAATGCCGCTGATGCTCGTGCATACGGGCGAAATTATCTGCGCAGGTAATGGTGCCGATTCGCCGCAATAATCCCATCCCGCGCGACGAATTGCTATCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGTGAGTTTTCTCATTGa                                                                                                                                                                                                          <  2:618317/272‑1 (MQ=255)              cGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACGTGCTGTACTCCAGCGCCTCTGGCAACGTTAACGCTCCGACCCTACACATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCNCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGGTTTCTCATTGAAAATCACGGccctg                                                                                                                                                                                            >  1:618326/1‑272 (MQ=255)                       gCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACGTGCTGTACTCCAGCGCCTCTGGCAACGTTAACGCTCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCACTTTTTCCCGCAGTATCATACCGTCACGCCGTTTAATAGTGGGCTTAGTGGAGGGAGTTTTCTAATTGAACACACAGGCCAACGTTttgttg                                                                                                                                                                                   >  1:432008/1‑275 (MQ=255)                                    cccGCAATGTCGGCGCTCATTACTTGCTGTACTCCAGCGCCTCTGGCAACGTTAACGCTCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTNAAGGTGCCGTGACGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCa                                                                                                                                                                      <  1:651536/275‑1 (MQ=255)                                                        acaaacctaactgttgcttcgccatcgacagttgctgggcggaaaccagggtaaatttcccgttattagccagcgcatttcgcagcgtttcggtcgcttctgcggcattcagcgaaccgttagtacggttgttaacgctatcaaccagcaggacgctacccgcagtcaccccgtcaCGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCa                                                                                                                                                                                                    >  1:161522‑M2/177‑225 (MQ=255)                                                            acctaactgttgcttcgccatcgacagttgctgggcggaaaccagggtaaatttcccgttattagccagcgcatttcgcagcgtttcggtcgcttctgcggcattcagcgaaccgttagtacggttgttaacgctatcaaccagcaggacgctacccgcagtcaccccgtcaCGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGc                                                                                                                                                                                                <  2:161519‑M2/53‑1 (MQ=255)                                                                         cgcCTCTGGCAACGTTAACGCTCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAAAATCAgg                                                                                                                                                                                                  >  2:95711/1‑210 (MQ=255)                                                                            ctctGGCAACGTTAACGCTCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCacg                                                                                                                                                                                                                                                   <  1:246706/158‑1 (MQ=255)                                                                             tctGGCAACGTTAACGCTCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCa                                                                                                                                                                                              <  1:95712/210‑1 (MQ=255)                                                                                                  aCCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCNTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGGCAGCCGCACGATTCTGATGCGCCGCCGTCCGCGTTCTTGCGCACGTATCGGGGTTTATCACAAATACCCg                                                                                                        >  1:603261/1‑275 (MQ=255)                                                                                                    tccagggttaatttcccgttattagccatcgcatttcgcagcgtttcggtcgcttctgcggcattcagcgaaccgttagcacggttgttaacgctatcaaccagcaggacgctacccgcagtcaccccgtcaCGTCGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGTCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCgca                                                                                                      <  1:692377‑M2/143‑1 (MQ=255)                                                                                                                gCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGGGTTTTCTCAtttt                                                                                                                                                                                                          >  2:516129/1‑161 (MQ=255)                                                                                                                    aTGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGCCGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACAt                                                                                                                                                                                                      <  1:516136/163‑1 (MQ=255)                                                                                                                                        acttATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTGTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGTGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCGCATGCATTGCACCGAAGCCGCATTTATATCTCCGTGa                                                                   <  1:621232/272‑1 (MQ=255)                                                                                                                                             cgtttcggtcgcttctgcggcattcagcgaaccgttagtacggttgttaacgctatcaaccagcaggacgctacccgcagtcaccccgtcaCGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAgg                                                                                                                                                                                                  >  1:550349‑M2/92‑142 (MQ=255)                                                                                                                                               tGGTCAGTTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCGCATGCATTGCACCGAAGCCGCATTTATATCTCCGTGACTGGa                                                              <  1:190019/272‑1 (MQ=255)                                                                                                                                               tGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGCTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCGCATGCATTGCACCGAAGCCGCATTTATATCTCCGTGACTGGa                                                              <  1:399667/272‑1 (MQ=255)                                                                                                                                                 tcggtcgcttctgcggcattcagcgaaccgttagtacggttgttaacgctatcaaccagcaggacgctacccgcagtcaccccgtcaCGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCa                                                                                                                                                                                              <  2:550340‑M2/55‑1 (MQ=255)                                                                                                                                                      ttagccagcgcatttCTCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCGCATGCATTGCACCGAAGCCGCATTTATATCTCCGTGACTGGATGGTAGTCg                                                     <  1:108419/262‑1 (MQ=255)                                                                                                                                                                cGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGc                                                                                                                                                                          >  1:60047/1‑147 (MQ=255)                                                                                                                                                                    tCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCa                                                                                                                                                                      <  2:60046/147‑1 (MQ=255)                                                                                                                                                                                                        gTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCGCATGCATTGCACCGAAGCCGCATTTATATCTCCGTGACTGGATGGTAGTCGACTATCTGCCCGGCGCGGTAAAAACGTATTTGCCGGATACCAACGAACTgg  <  1:11914/275‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                   CAGTTTAGGCACCCGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACGTGCTGTACTCCAGCGCCTCTGGCAACGTTAACGCTCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAATAATCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTATCATCCCGTCACGACGTTTAATAGTGGGCTTAGTGGCGGGAGTTTTCTCATTGAACATCAGGGCCAGCGTTTTGTTGTGCGTCAGCCGCACGATCCTGATGCGCCGCAGTCCGCGTTCTTGCGCCAGTATCGGGCTTTATCACAACTACCCGCATGCATTGCACCGAAGCCGCATTTATATCTCCGTGACTGGATGGTAGTCGACTATCTGCCCGGCGCGGTAAAAACGTATTTGCCGGATACCAACGAACTGG  >  CP009273/1158561‑1159034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.