New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1280805	21 (0.550)	6 (0.160)	5/298	NT	20.0%	coding (211/711 nt)	narJ	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
	?	CP009273	= 1280852	28 (0.770)					coding (258/711 nt)	narJ	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1

ACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGCCGT  >  CP009273/1280603‑1281061                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                 aCTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATTGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGCTGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCTAACGCTGCCAGGCGATGTTGGACctt                                                                                                                                                                                           >  1:684172/1‑273 (MQ=255) aCTCGTGATTGTATCGCGTCTCCATGAATATCAGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGAGCAGTACAGCGANCTGTTAGACCGTGGCAGAGCAACGTCACTGTTGCATTTTGAACATGTGCACGGCGAAACCCGCGCCAGCAGCCCGGCGCAGGTGGagatgc                                                                                                                                                                                          >  1:512495/1‑270 (MQ=255)      tGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCATGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCCCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCCCGGCCCGGCGATGGTGCACCGGCgggg                                                                                                                                                                                      >  2:189506/1‑273 (MQ=255)                 cgTCTCCTTGAATATCAGGATGCTGCCTCATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCNGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagca                                                                                                                                                                          >  1:514355/1‑275 (MQ=255)                                             tATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGCGCAGCACGGCTTGCAGATAAACAGCcgc                                                                                                                                                 >  1:138938/1‑272 (MQ=255)                                                                 aTGTTTGGGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGc                                                                                                                           <  1:189509/274‑1 (MQ=255)                                                                   gTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGCTCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTTGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggt                                                                                                                                                                                                       <  1:431409‑M2/196‑13 (MQ=255)                                                                   gTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggt                                                                                                                                                                                                       <  1:138474‑M2/196‑13 (MQ=255)                                                                                                            aTGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACt                                                                                                                                                                                                                                                        >  1:560336/1‑106 (MQ=255)                                                                                                              gccccggcgcTGGTCATTGGCCTCCGCGGTTTAACGACGATGGATCCGCGCGATGCCCAGGCGCAGGACAGCGAACTGGTCGACCGTGGCCGCGCCACGTCACTGTTGCTGGTTGAACAGGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCAGCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGa                                                                             <  2:138937/269‑1 (MQ=255)                                                                                                                ccATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTg                                                                                                                                                                                                                                                    <  2:560327/106‑1 (MQ=255)                                                                                                                         gggCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCcgcg                                                                                                                                                                                                                     >  1:599502/1‑128 (MQ=255)                                                                                                                           gCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacag                                                                                                                                                                                                                                 >  1:590846‑M1/1‑81 (MQ=255)                                                                                                                             aTTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcg                                                                                                                                                                                                                 >  2:599493‑M2/1‑126 (MQ=255)                                                                                                                               tttCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaac                                                                                                                                                                                                                             <  2:590837‑M1/114‑38 (MQ=255)                                                                                                                                                     aTGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGcc                                                                                                                                                                                                                                                                >  2:185028/1‑57 (MQ=255)                                                                                                                                                         aTCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCa                                                                                                                                                                                                                                                               <  1:467368/54‑1 (MQ=255)                                                                                                                                                         aTCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGt                                                                                                                                                                                                                                                            <  1:185031/57‑1 (MQ=255)                                                                                                                                                              cTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGGTTGAAAGATAACGCGCCGATTCTGGCATTGCTGAGCGCGCGTCt                             >  1:402340/1‑275 (MQ=255)                                                                                                                                                                  aTGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaa                                                                                                                                                                                                                                     >  2:351087‑M1/1‑42 (MQ=255)                                                                                                                                                                      ccAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacag                                                                                                                                                                                                                                 <  1:351093‑M1/71‑34 (MQ=255)                                                                                                                                                                        aGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGGACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCAGCTGTATCTGGAGTACCTGGCGCAGCAGCCGCAAAGCGGAGCCGGGGAAGGCTTGAAGGATAACGCGCCGCATCTGGCAATGCTGAGGGCGCGGCtcccaccaca                    >  2:222538/1‑265 (MQ=255)                                                                                                                                                                                tACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGAGCAGTAAGAGCAGCCCGGCTTGCAGTTACACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACATGGCGCAGCTGCCGCAAAGCGAAGACGGGGACGGTGTGAAAGATATCGCGCCGATTCTGGCATTGCGGAGCGGGCGTGTGCAACAGCGTGACACCCg           >  2:609755/1‑275 (MQ=255)                                                                                                                                                                                    gCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacattttcaa                                                                                                                                                                                                                                     >  1:675423‑M1/1‑24 (MQ=255)                                                                                                                                                                                     cGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTg                                                                                                                               >  1:408354/1‑154 (MQ=255)                                                                                                                                                                                        aCTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacag                                                                                                                                                                                                                                 <  2:675414‑M1/53‑34 (MQ=255)                                                                                                                                                                                        aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCNGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATg      >  1:603326/1‑272 (MQ=255)                                                                                                                                                                                         cTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGc                                                                                                                           <  2:408347/154‑1 (MQ=255)                                                                                                                                                                                          tGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGACGCCg                                                                                 >  1:345323/1‑195 (MQ=255)                                                                                                                                                                                          tGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATATGCCGCTGTATNTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGcc    >  1:668077/1‑272 (MQ=255)                                                                                                                                                                                          tGTTCGAACGTGGCCGCGACACGTCAATGTTGGTGTTTGAACAGGTGAACGGGGAATCCAGCGGCCGCGGCCAGGCGATGGGGGACCTGGNGGCGGAGTACGAGCAGCACGGCGTGCAGTTAAACAGCCGCGAATTGCCGGACGATCGGCCGCTGTATCTGGAGTACCTGGCGCAGCGGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGACTCTGGCATTGCTGCGCGCGCGTTTGCGTCAGCGTGTAAGCCGTTATGCCGt  <  1:506431/274‑1 (MQ=255)                                                                                                                                                                                              cgcccGAGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGGGCAAGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGa                                                                             <  2:345317/192‑1 (MQ=255)                                                                                                                                                                                                aCCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaatcgcgcaggaaaatgcccagcgcatgggcatcctcttttggcagatttttcgacgcggcaatcgcctcaaac                                                                          <  1:138474‑M1/196‑185 (MQ=255)                                                                                                                                                                                                aCCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggcaacggtcgaacagttcgctgtactgcgcctgggcatcgagcggagccatcgtcgttaaatcgcgcaggaaaatgcccagcgcatgggcatcctcttttggcagatttttcgacgcggcaatcgcctcaaac                                                                          <  1:431409‑M1/196‑185 (MQ=255)                                                                                                                                                                                                          cggtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaatcgcgcaggaaaat                                                                                                                                    >  2:599493‑M1/1‑2 (MQ=255)                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                 ACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGCCGT  >  CP009273/1280603‑1281061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.