New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1280805	21 (0.550)	6 (0.160)	5/298	NT	20.0%	coding (211/711 nt)	narJ	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
	?	CP009273	= 1280852	28 (0.770)					coding (258/711 nt)	narJ	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1

ACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGCCGTGCTGTTTGATCTGCTGCTGAAACTGGCGAATACCGCTATCGACAGCGACAA  >  CP009273/1280603‑1281112                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                     aCTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATTGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGCTGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCTAACGCTGCCAGGCGATGTTGGACctt                                                                                                                                                                                                                                              >  1:684172/1‑273 (MQ=255) aCTCGTGATTGTATCGCGTCTCCATGAATATCAGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGAGCAGTACAGCGANCTGTTAGACCGTGGCAGAGCAACGTCACTGTTGCATTTTGAACATGTGCACGGCGAAACCCGCGCCAGCAGCCCGGCGCAGGTGGagatgc                                                                                                                                                                                                                                             >  1:512495/1‑270 (MQ=255)      tGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCATGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCCCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCCCGGCCCGGCGATGGTGCACCGGCgggg                                                                                                                                                                                                                                         >  2:189506/1‑273 (MQ=255)                 cgTCTCCTTGAATATCAGGATGCTGCCTCATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCNGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagca                                                                                                                                                                                                                             >  1:514355/1‑275 (MQ=255)                                             tATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGCGCAGCACGGCTTGCAGATAAACAGCcgc                                                                                                                                                                                                    >  1:138938/1‑272 (MQ=255)                                                                 aTGTTTGGGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGc                                                                                                                                                                              <  1:189509/274‑1 (MQ=255)                                                                   gTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGCTCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTTGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggt                                                                                                                                                                                                                                                          <  1:431409‑M2/196‑13 (MQ=255)                                                                   gTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggt                                                                                                                                                                                                                                                          <  1:138474‑M2/196‑13 (MQ=255)                                                                                                              gccccggcgcTGGTCATTGGCCTCCGCGGTTTAACGACGATGGATCCGCGCGATGCCCAGGCGCAGGACAGCGAACTGGTCGACCGTGGCCGCGCCACGTCACTGTTGCTGGTTGAACAGGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCAGCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGa                                                                                                                                <  2:138937/269‑1 (MQ=255)                                                                                                                             aTTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcg                                                                                                                                                                                                                                                                    >  2:599493‑M2/1‑126 (MQ=255)                                                                                                                                                              cTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGGTTGAAAGATAACGCGCCGATTCTGGCATTGCTGAGCGCGCGTCt                                                                                >  1:402340/1‑275 (MQ=255)                                                                                                                                                                        aGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGGACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCAGCTGTATCTGGAGTACCTGGCGCAGCAGCCGCAAAGCGGAGCCGGGGAAGGCTTGAAGGATAACGCGCCGCATCTGGCAATGCTGAGGGCGCGGCtcccaccaca                                                                       >  2:222538/1‑265 (MQ=255)                                                                                                                                                                                tACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGAGCAGTAAGAGCAGCCCGGCTTGCAGTTACACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACATGGCGCAGCTGCCGCAAAGCGAAGACGGGGACGGTGTGAAAGATATCGCGCCGATTCTGGCATTGCGGAGCGGGCGTGTGCAACAGCGTGACACCCg                                                              >  2:609755/1‑275 (MQ=255)                                                                                                                                                                                     cGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTg                                                                                                                                                                                  >  1:408354/1‑154 (MQ=255)                                                                                                                                                                                        aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCNGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATg                                                         >  1:603326/1‑272 (MQ=255)                                                                                                                                                                                         cTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGc                                                                                                                                                                              <  2:408347/154‑1 (MQ=255)                                                                                                                                                                                          tGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGACGCCg                                                                                                                                    >  1:345323/1‑195 (MQ=255)                                                                                                                                                                                          tGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATATGCCGCTGTATNTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGcc                                                       >  1:668077/1‑272 (MQ=255)                                                                                                                                                                                          tGTTCGAACGTGGCCGCGACACGTCAATGTTGGTGTTTGAACAGGTGAACGGGGAATCCAGCGGCCGCGGCCAGGCGATGGGGGACCTGGNGGCGGAGTACGAGCAGCACGGCGTGCAGTTAAACAGCCGCGAATTGCCGGACGATCGGCCGCTGTATCTGGAGTACCTGGCGCAGCGGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGACTCTGGCATTGCTGCGCGCGCGTTTGCGTCAGCGTGTAAGCCGTTATGCCGt                                                     <  1:506431/274‑1 (MQ=255)                                                                                                                                                                                              cgcccGAGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGGGCAAGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGa                                                                                                                                <  2:345317/192‑1 (MQ=255)                                                                                                                                                                                                                      gTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaatcgcgcaggaaa                                                                                                                                                                                         <  2:590837‑M2/114‑78 (MQ=255)                                                                                                                                                                                                                         gCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAt                                                                                                                                                                                                                                                        >  2:654568/1‑48 (MQ=255)                                                                                                                                                                                                                         gCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCAc                                                                                                                                                                                                                         >  2:474519/1‑79 (MQ=255)                                                                                                                                                                                                                          cTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaatcgcgcaggaaaatgc                                                                                                                                                                                     >  1:590846‑M2/1‑33 (MQ=255)                                                                                                                                                                                                                          cTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgcgcctgg                                                                                                                                                                                                                                <  1:351093‑M2/71‑39 (MQ=255)                                                                                                                                                                                                                          cTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagt                                                                                                                                                                                                                                                  <  2:675414‑M2/53‑21 (MQ=255)                                                                                                                                                                                                                            gTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGCGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCAGTTATGCCGTGCTGTTTGATCTGCTGCTGACACTGGCGAATACCg                  >  1:454827/1‑275 (MQ=255)                                                                                                                                                                                                                             tttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggtg                                                                                                                                                                                                                                                    <  1:654577/48‑1 (MQ=255)                                                                                                                                                                                                                             tttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCt                                                                                                                                                                                                                     <  1:474526/79‑1 (MQ=255)                                                                                                                                                                                                                              ttGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgcgcctgggcat                                                                                                                                                                                                                            >  2:351087‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                              ttGAAAATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgc                                                                                                                                                                                                                                              >  1:675423‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                       tgCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGc                                                                                                                                                                                                       >  1:568051/1‑83 (MQ=255)                                                                                                                                                                                                                                       tgCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGaaa                                                                  >  1:445889/1‑216 (MQ=255)                                                                                                                                                                                                                                           cGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcgcg                                                                                                                                                                                                   <  2:568042/83‑1 (MQ=255)                                                                                                                                                                                                                                           cGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTCTCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGCCGTGCTGTTTGATCTGCTGCTGAAACTGGCGAAAACCGCTATCTACAGCGACa   >  1:1026/1‑275 (MQ=255)                                                                                                                                                                                                                                           cGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCg                                                              <  2:445882/216‑1 (MQ=255)                                                                                                                                                                                                                                            ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGACATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGCCGTGCTGTTTGATCTGCTGCTGAAACTGGCGAATACCGCTATCGACAGCGACaa  >  1:392898/1‑275 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                     ACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTATCTGGAGTACCTGGCGCAGCTGCCGCAAAGCGAAGCCGTGGAAGGTTTGAAAGATATCGCGCCGATTCTGGCATTGCTGAGCGCGCGTCTGCAACAGCGTGAAAGCCGTTATGCCGTGCTGTTTGATCTGCTGCTGAAACTGGCGAATACCGCTATCGACAGCGACAA  >  CP009273/1280603‑1281112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.