New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1381355	22 (0.570)	25 (0.680)	10/302	NT	61.6%	coding (379/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	CP009273	= 1381505	10 (0.270)					coding (529/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase

CATTGGGCGAATCTACCTCAATTTTGCTGAACTGGAGTTTGAGAGTTTCAGCAGTCTGATGGCCGAAATACGCCGTATTGCGGGTGTTACCGATG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCG  >  CP009273/1381081‑1381609                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                               atttggGTGAATCTACCTCAATTTTGCTGAACTGGAGTGTGAGAGTTTCAGCAGTCTGATGTCCGAAATACGCCGTATTGCGGGTGTTACCGATG‑TGCGTACTGGCCCGTGGATGCCTTCCGAGCGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCGGTCAGCTTTTTGGGCAAAAATTGGATCGCCTTCGCAACCATACCGCCGCAC                                                                                                                                                                                                                                                                <  1:409157‑M1/273‑1 (MQ=255)                                                              gCCGAAATACGCCGTATTGCTGGTGTTACCGTTG‑TGTGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTAGAACGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGATGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAATATTCGCATaa                                                                                                                                                                                                   <  1:708630/275‑1 (MQ=255)                                                              gCCGAAATACGCCGTATTGCGGGTGTTACCGATG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTTTGCT‑CTCTTTCGATATGAAAAGCAAAGTGGATATGGCGAATCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGAGCAACCATACCGCCGCACccttccgtacgtgttgatcattttcatccttaagataaacaggcgtaattcccatcaggaa                                                                                                                                                                                                   >  1:671123‑M1/1‑214 (MQ=255)                                                              gCCGAAATACGCCGTATTGCGGGTGTTACCGATG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcatt                                                                                                                                                                                                                                          >  1:264269‑M1/1‑214 (MQ=255)                                                              gCCGAAATACGCCGTATTGCGGGTGTTACCGATG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAACTGGCAGCTGTTTCGGCAAAAATTGGATCGCCTCCGCAACCATAACGCCCCACcggtcaggacgtgtgaaaccgattcatcctgcagataaacacgcttaatctccatcagga                                                                                                                                                                                                    >  2:639560‑M1/1‑214 (MQ=255)                                                                  aaaTACGCCGTATTGCGGGTGTTACCGATG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttca                                                                                                                                                                                                                                      <  2:264264‑M1/236‑27 (MQ=255)                                                                   cgtgacctgtgttgggggtgttacCGGTGTTGTGT‑CTGTCCCGTGGTTTCCTTCTGATCGTTAGCTTCTGGTGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCTCCTCT‑TCGATATGAAAAGCAAAGGGGATATAGCGAACGCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAGCCATACCGCCTCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattc                                                                                                                                                                                               <  2:109183‑M1/263‑66 (MQ=255)                                                                                      gtTACCGATG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCCGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattcttcccattaatctatctctc                                                                                                                                                                           >  1:109184‑M1/1‑190 (MQ=255)                                                                                             gagtggCGTAGTGTCCCGTGGATGGCTTCCGAACGTGAGCATCTGGCGTTGAGAGCGTTAAGGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAAtt                                                                                                                                                                      <  1:73260/269‑1 (MQ=255)                                                                                             aTG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaa                                                                                                                                                                                                   >  1:684841‑M1/1‑183 (MQ=255)                                                                                             aTG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGACGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaa                                                                                                                                                                                                   >  1:397465‑M1/1‑183 (MQ=255)                                                                                             aTG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCATGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttaatcctgaagataaacagtctgcctctccatcaggaaattacgcccattaataataacatttgtt                                                                                                                                                                       >  2:395694‑M1/1‑183 (MQ=255)                                                                                              tg‑tgCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcngtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttat                                                                                                                                                                   >  1:509669‑M1/1‑182 (MQ=255)                                                                                              tg‑tgCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaa                                                                                                                                                                                                   >  1:205720‑M1/1‑182 (MQ=255)                                                                                               g‑tgCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAAAGGCTTTAATTTTTTACGTTGGCTGGAAAGAGAACCGCAAGATTCGTACAACGATCCTATGGTTATTAATAGTCAAAAATTcc                                                                                                                                                                   >  2:346277/1‑274 (MQ=255)                                                                                                  gCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttca                                                                                                                                                                                                                                      <  1:246574‑M1/205‑27 (MQ=255)                                                                                                  gCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGGTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattc                                                                                                                                                                                               <  2:684832‑M1/244‑66 (MQ=255)                                                                                                               tGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGACTGAACCTGTGCT‑CTCTGTCGATATGACAAGCAAAGAGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTACTTTTTTACGTTGGCTGGAAAGCGAACCGCAAGCTTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGCATACg                                                                                                                                                     >  1:44729/1‑273 (MQ=255)                                                                                                                    gCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGttt                                                                                                                                              >  1:258527/1‑275 (MQ=255)                                                                                                                                 gggCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAGTTTTTTACGTTTCCTGGAAAGCGAACCGCAAGATTCGCATACCAGGCATGTCGTTATTACTTGGCAGAATTTCATGATGGCGTTTACGCCCTTTTATCTTCCGGATgc                                                                                                                                 >  2:12533/3‑274 (MQ=255)                                                                                                                                           gggtGAGGGNGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCaa                                                                                                                       <  2:258522/272‑1 (MQ=255)                                                                                                                                            gTTGGGCGCGTTACTGGAGGATTTTCCTGTACCTTTTCT‑GTCTGTCGATATGAAAAGGAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAac                                                                                                                      <  1:346283/275‑1 (MQ=255)                                                                                                                                               tagggcgttacTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaagccg                                                                                                                    <  1:395701‑M1/270‑141 (MQ=255)                                                                                                                                               gtgcgcgtTACTGTAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACTATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaagccg                                                                                                                    <  1:639569‑M1/272‑141 (MQ=255)                                                                                                                                               gaacgagtttatggtggcgtggcaggaaCCGGTGCT‑CTCTGTCGTTTTGAAAAGCAAAGTGGATATGGCGAACCCGGCGCGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCGGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaagccg                                                                                                                    <  2:509662‑M1/263‑141 (MQ=255)                                                                                                                                                  cgcgTTACTGGAGGCGTTGGCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGTTATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAACATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAGTTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCTTGATGGAGATTACGCCTGTTTATCTTAAGGATGAAAATGATAAACACGTcc                                                                                                                >  1:572534/1‑275 (MQ=255)                                                                                                                                                  cgcgTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTGTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGAACAAAACGTcc                                                                                                                >  1:631805/1‑275 (MQ=255)                                                                                                                                                        taaggAGGGGTTGAATTAACCTTTNAT‑CTCTTTCGTTATGAAAAGCAAAGTGGATCTGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGAc                                                                                                            <  2:463457/270‑1 (MQ=255)                                                                                                                                                           ggAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaa                                                                                                                        >  1:633168‑M1/1‑122 (MQ=255)                                                                                                                                                               gCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaagccg                                                                                                                    <  2:633159‑M1/258‑141 (MQ=255)                                                                                                                                                                               tgCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGCTTACCGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATACCGAGCCTGTCGTTATTCATTGGCAGAATTTCCTCATGGAGATTCCGCCTGTTTATCTTAAGGATGAAAATGCTCAACACGTCATGACCGGTGCGGTGGTGATGtttcctgc                                                                                    >  2:172207/1‑268 (MQ=255)                                                                                                                                                                                       tGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGACATTACGCCTGTTTATCTTCAGGATGAAAATGAt                                                                                                                          >  1:690866/1‑229 (MQ=255)                                                                                                                                                                                          cGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaaccggcgtaatctccagcaggat                                                                                                                                                                                                   >  1:623860‑M1/1‑92 (MQ=255)                                                                                                                                                                                          cGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaa                                                                                                                                                                                                   >  2:303261‑M1/1‑92 (MQ=255)                                                                                                                                                                                          cGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcatt                                                                                                                                                                                                                                          >  1:647789‑M1/1‑92 (MQ=255)                                                                                                                                                                                              atGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattc                                                                                                                                                                                               <  1:303267‑M1/153‑66 (MQ=255)                                                                                                                                                                                              atGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttca                                                                                                                                                                                                                                      <  2:647780‑M1/114‑27 (MQ=255)                                                                                                                                                                                               tGAAAAGCAATGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGgaga                                                                                                                                                          >  1:704672/1‑189 (MQ=255)                                                                                                                                                                                                   aaGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTAc                                                                                                                                                      <  2:704662/189‑1 (MQ=255)                                                                                                                                                                                                     gCAAAGTGGATAGTGCGAACCCGGCGAGCTTGCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCTCACAATTGATTAACGGCTTTAATTTTTTACTTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAg                                                              <  1:172210/275‑1 (MQ=255)                                                                                                                                                                                                                atGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAAAGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTaa                                                                                                                                                                                 >  2:595001/1‑149 (MQ=255)                                                                                                                                                                                                                    cGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATggg                                                                                                                                                                             <  1:595010/149‑1 (MQ=255)                                                                                                                                                                                                                                           tttGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaa                                                                                                                        >  2:231167‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                                               ggCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaagccg                                                                                                                    <  1:231172‑M1/179‑141 (MQ=255)                                                                                                                                                                                                                                                               ccTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGAt                                                                                                                                   >  1:347818/1‑148 (MQ=255)                                                                                                                                                                                                                                                                 ttcgcAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCg  <  1:12533/273‑1 (MQ=255)                                                                                                                                                                                                                                                                   cgcAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGaaa                                                                                                                               <  2:347812/148‑1 (MQ=255)                                                                                                                                                                                                                                                                             ccgccgCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGc                                                                                                                                                                                                                >  1:147495/1‑57 (MQ=255)                                                                                                                                                                                                                                                                                 cgcACcggtcaggacgtgttgatcattttcatcctgaagataaacaggcgtaatctccatcaggaaattctgcccattaataacgacatgctcgttatgcgaatcttgcggttcgctttccagccaacgtaaaaaattaaagc                                                                                                                      <  2:131405‑M1/143‑139 (MQ=255)                                                                                                                                                                                                                                                                                 cgcACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGa                                                                                                                                                                                                            <  2:147494/57‑1 (MQ=255)                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                               CATTGGGCGAATCTACCTCAATTTTGCTGAACTGGAGTTTGAGAGTTTCAGCAGTCTGATGGCCGAAATACGCCGTATTGCGGGTGTTACCGATG‑TGCGTACTGTCCCGTGGATGCCTTCCGAACGTGAGCATCTGGCGTTGAGCGCGTTACTGGAGGCGTTGCCTGAACCTGTGCT‑CTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCG  >  CP009273/1381081‑1381609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.