| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1381355 | 22 (0.570) | 25 (0.680) | 10/302 | NT | 61.6% | coding (379/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | CP009273 | = 1381505 | 10 (0.270) | coding (529/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
TGCTCTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCTTTGCCTACGCCTGCCATCAGGCAAGCCCCAGAGCGGGCAAACCTTACCTGG > CP009273/1381254‑1381754 | tgCTCTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGCTTACCGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATACCGAGCCTGTCGTTATTCATTGGCAGAATTTCCTCATGGAGATTCCGCCTGTTTATCTTAAGGATGAAAATGCTCAACACGTCATGACCGGTGCGGTGGTGATGtttcctgc > 2:172207/1‑268 (MQ=255) gCAAAGTGGATAGTGCGAACCCGGCGAGCTTGCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCTCACAATTGATTAACGGCTTTAATTTTTTACTTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAg < 1:172210/275‑1 (MQ=255) ttcgcAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCg < 1:12533/273‑1 (MQ=255) cGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcccta < 1:395701‑M2/274‑135 (MQ=255) cGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgc < 2:633159‑M2/258‑119 (MQ=255) cGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcc < 1:231172‑M2/179‑40 (MQ=255) cGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatagttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctacagtaacgcgcac < 1:639569‑M2/274‑135 (MQ=255) cGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgccgcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagcgcgccgggttcgccatatccactttgcttttcaaaacgacagagagcaccggttcctgccacgccaccataaactcgttc < 2:509662‑M2/274‑135 (MQ=255) gCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcg < 2:131405‑M2/143‑6 (MQ=255) tttAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctcc > 1:633168‑M2/1‑136 (MQ=255) tttAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaa > 2:231167‑M2/1‑136 (MQ=255) tAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCggtgg < 1:131406/143‑1 (MQ=255) aTTCTTTTCGTTGGCTGGAAATCGAACCGCTATATTCGCATTACGAGCATGTCGTTATTAATGGGCAGAATTTCCCGATGGAGGTTACGCGCGGTTATCTTCAGGAAGAAAATGCTGAACACGTGCTGACCGATGCGGTTGTGATGTTGCGATCAACGATTCGTATTGGCCGGCAGTTGCAAAATGTCGACGCCGAGGACGTCAGAGCCTTAAATCAAATTGTCGCCGTCAGCCCGAAAATGGAGCATGTTGTCGAACAGGCGCAGAAACTGGc < 2:631796/274‑1 (MQ=255) aTAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACNGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcaca > 1:509669‑M2/1‑93 (MQ=255) aacaaatgttaTTATTAATGGGCGTAATTTCCTGATGGAGAGGCAGACTGTTTATCTTCAGGATTAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcatgcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacat > 2:395694‑M2/6‑89 (MQ=255) gagagatagattaatgggaagaATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagcggacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacatcggtaac > 1:109184‑M2/10‑85 (MQ=255) gTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGAtct < 1:212512/275‑1 (MQ=255) attaATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACg > 1:394311/1‑145 (MQ=255) aTGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAg < 2:394304/145‑1 (MQ=255) gAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaccgccagatgctcacgttcggaaggcatccacgggacagtacgc < 2:684832‑M2/244‑180 (MQ=255) gAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcat < 1:303267‑M2/153‑89 (MQ=255) gAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgaggcggtatggctgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgcgttcgctatatcccctttgcttttcatatcgaagaggagcacaggttcaggcaacgcctccagtaacgcgctcaacaccagaagctaacgatcagaaggaaaccacgggacagacacaacaccggtaacacccccaacacaggtcacg < 2:109183‑M2/274‑210 (MQ=255) ttCCTGATGGGAATTACGCCTGTTTATCTTAAGGATGAAAATGATCAACACGTACGGAAGGgtgcggcggtatggttgctcaggcgatccaatttttgcccaaaaagctgacagctcgccggattcgccatatccactttgcttttcatatcgaaagagagcaaaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacatcggtaacacccgcaatacggcgtatttcggc > 1:671123‑M2/1‑61 (MQ=255) ttCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcgtcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacat > 1:397465‑M2/1‑61 (MQ=255) ttCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacat > 1:684841‑M2/1‑61 (MQ=255) ttCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcaca > 1:205720‑M2/1‑61 (MQ=255) ttCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcg > 2:303261‑M2/1‑61 (MQ=255) atcCTGCTGGAGATTACGCCGGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcg > 1:623860‑M2/2‑61 (MQ=255) tCCTGATGGAGATTAAGCGTGTTTATCTGCAGGATGAATCGGTTTCACACGTCCTGACCGgtggggcgttatggttgcggaggcgatccaatttttgccgaaacagctgccagttcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacatcggtaacacccgcaatacggcgtatttcggc > 2:639560‑M2/1‑60 (MQ=255) tCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCAtgttgt > 1:56934/1‑153 (MQ=255) gATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGaa < 2:56934/153‑1 (MQ=255) tGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacatcggtaacacccgcaatacggcgtattt < 2:264264‑M2/236‑211 (MQ=255) tGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgc < 1:246574‑M2/205‑180 (MQ=255) tGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcat < 2:647780‑M2/114‑89 (MQ=255) tGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCTTTGCCTACGACTGCCATCAGGCAAGCCCCAGAGCGGGCAAACCTTACCTgg > 2:660117/1‑275 (MQ=255) aaTGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcgacagagagcacaggttcaggcaacgcctccagtaacgcgctcaacgccagatgctcacgttcggaaggcatccacgggacagtacgcacatcggtaacacccgcaatacggcgtatttcggc > 1:264269‑M2/1‑22 (MQ=255) aaTGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgcccaaaaagctgacagctcgccgggttcgccatatccactttgcttttcatatcg > 1:647789‑M2/1‑22 (MQ=255) | TGCTCTCTGTCGATATGAAAAGCAAAGTGGATATGGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCTTTGCCTACGCCTGCCATCAGGCAAGCCCCAGAGCGGGCAAACCTTACCTGG > CP009273/1381254‑1381754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |