New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1413126 =	35 (0.910)	43 (1.160)	12/302	NT	56.0%	coding (199/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	1413206 =	34 (0.920)					coding (279/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein

TACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGC  >  CP009273/1412908‑1413326                                                                                                                                                                                                                           |                                                                                                                                                                                                         cagtaagctaacgattaaaacgtctactcctgctgttccagaataacttcataaaatgggagtatttttcggtgacgagataataagaacagtttgcgctatcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTAAAGATTGCGAGCACATATTCAAAAGCATTATTCattactaccaaataaacta                                                                                                                                                  <  2:580582‑M1/57‑10 (MQ=255)        gagaGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTCGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGAt                                                                                                                                                                                                 >  2:42733/1‑221 (MQ=255)        ctaatgattaatacgtctactccttctgttccagaataacttcataaaatgggagtatttttcggtgacgagataataagaacagtttgcgctatcactctgatgttgaatgatgcccttccgtcctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:580591‑M1/212‑274 (MQ=255)          gagTTATTTATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCt                                                                                                                                          <  1:97991/274‑1 (MQ=255)           agTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTTCTCTCCCTTTCCTTCTCAATATTGCGAGCACATATTCACAAGCATTATTCCTTCCTCCCAGTTCAACGAGCAt                                                                                                                                              >  2:97990/1‑269 (MQ=255)            gTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTCGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCg                                                                                                                                                                                             <  1:42733/221‑1 (MQ=255)                       gTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTNGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCa                                                                                                                                                                           >  1:547859/1‑228 (MQ=255)                                 atcactctgatgttgAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTTGGTTATCTGCACACGAAATCGc                                                                                                                  >  2:140991/11‑275 (MQ=255)                                  tcactctgatgttgAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTGTCTTTCGTGGTCGCCATTTNCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTCTCTGAGAAAGAAATCGc                                                                                                                  >  1:547801/10‑274 (MQ=255)                                         aTTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTTTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATta                                                                                                                                                                 >  2:430192/1‑220 (MQ=255)                                         aTTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATta                                                                                                                                                                 >  2:351817/1‑220 (MQ=255)                                           tgttgAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCAATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTAATTACTACAAGAGCACCGAGTATTGATTCGTTTATCTGACAAAGAAATCGCTGTATTTaaa                                                                                                        >  1:88051/1‑275 (MQ=255)                                             ttgAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTTTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATtactac                                                                                                                                                             <  1:430199/220‑1 (MQ=255)                                             ttgAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATtactac                                                                                                                                                             <  1:351823/220‑1 (MQ=255)                                               gAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGca                                                                                                                                                                                         >  2:704266/1‑190 (MQ=255)                                                   cTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACata                                                                                                                                                                                     <  1:704276/190‑1 (MQ=255)                                                   cTTTGTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCGCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGGAATACCGTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCattat                                                                                                                                                                       <  1:75331/204‑1 (MQ=255)                                                                   cACTCGAGATACTGTTTTATACGAGTATCTTTTTTGGTCTCACTCTCTTGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATAACTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCtt                                                                                <  2:88050/275‑1 (MQ=255)                                                                                       aCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGc                                                                                                                                                                                              >  2:447427/1‑145 (MQ=255)                                                                                           ttATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGc                                                                                                                                                                                          <  1:447434/145‑1 (MQ=255)                                                                                             aTCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTATTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAAAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCATATTATCACTTCTCCTTTCCGTAAacc                                                      >  2:328461/1‑275 (MQ=255)                                                                                                  gctatcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:60133‑M1/59‑1 (MQ=255)                                                                                                  gctatcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  2:94189‑M1/59‑1 (MQ=255)                                                                                                  gctatcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:309005‑M1/59‑1 (MQ=255)                                                                                                   tttGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAATTCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATATTATTAAAACTTCTCCTTGACTTAACCCGTTTAt                                                >  2:683014/1‑275 (MQ=255)                                                                                                     tGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCA‑TTCCTTCTCAAGATTGCGAGCACatat                                                                                                                                                                                    >  1:374552/1‑140 (MQ=255)                                                                                                      tcactctgatgttgaatgatgcccttcctttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:539923‑M1/59‑1 (MQ=255)                                                                                                      tcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:146607‑M1/59‑1 (MQ=255)                                                                                                      tcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:308999‑M1/118‑180 (MQ=255)                                                                                                      tcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:60132‑M1/118‑180 (MQ=255)                                                                                                      tcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:94190‑M1/118‑180 (MQ=255)                                                                                                         ctcACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCA‑TTCCTTCTCAAGATTGCGAGCACATATTCaa                                                                                                                                                                                <  2:374546/140‑1 (MQ=255)                                                                                                          tctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:539915‑M1/114‑176 (MQ=255)                                                                                                          tctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:146606‑M1/114‑176 (MQ=255)                                                                                                               ctctGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                    <  1:140992/275‑1 (MQ=255)                                                                                                               atatGGATGATAAGGAAAGAGTTTACTGTCGCATTCAATGCTTATAATGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                    <  2:547792/272‑1 (MQ=255)                                                                                                                              aaaGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGca                                                                                                                                                                                         >  2:174407/1‑111 (MQ=255)                                                                                                                                  agTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACata                                                                                                                                                                                     <  1:174410/111‑1 (MQ=255)                                                                                                                                    tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:144035‑M1/59‑1 (MQ=255)                                                                                                                                    tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:335526‑M1/59‑1 (MQ=255)                                                                                                                                    tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  2:313649‑M1/59‑1 (MQ=255)                                                                                                                                    tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  2:281314‑M1/59‑1 (MQ=255)                                                                                                                                    tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:568573‑M1/59‑1 (MQ=255)                                                                                                                                     ctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  2:21714‑M1/59‑1 (MQ=255)                                                                                                                                     ctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:149012‑M1/59‑1 (MQ=255)                                                                                                                                     ctaattgtttcataacagggttacggcagggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:526709‑M1/59‑1 (MQ=255)                                                                                                                                       aattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACAAGAGCAACGAGt                                                                                                                                                <  1:581338‑M1/59‑1 (MQ=255)                                                                                                                                        attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:281319‑M1/84‑146 (MQ=255)                                                                                                                                        attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:568564‑M1/84‑146 (MQ=255)                                                                                                                                        attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:144034‑M1/84‑146 (MQ=255)                                                                                                                                        attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:335520‑M1/84‑146 (MQ=255)                                                                                                                                        attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:313655‑M1/84‑146 (MQ=255)                                                                                                                                         ttttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:149011‑M1/83‑145 (MQ=255)                                                                                                                                         ttttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:526701‑M1/83‑145 (MQ=255)                                                                                                                                         ttttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:21714‑M1/83‑145 (MQ=255)                                                                                                                                         tGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTGAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAAAATCaga          >  1:364396/1‑275 (MQ=255)                                                                                                                                           ttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:581329‑M1/81‑143 (MQ=255)                                                                                                                                            cGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTTAACAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGACATCTTATTATCACTTATCCTTGCAGTAACCCGGTTATGAAAAAATTAGAACGAAAGGACATCATTCAAAATCAGCGTg       >  1:268247/1‑275 (MQ=255)                                                                                                                                             ttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  2:586524‑M1/59‑1 (MQ=255)                                                                                                                                                 taaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:586533‑M1/75‑137 (MQ=255)                                                                                                                                                  cAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCCAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTCTGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAgc  <  1:683023/274‑1 (MQ=255)                                                                                                                                                                aaaTACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCa                                                                                                                                                                                 >  1:578592/1‑85 (MQ=255)                                                                                                                                                                    aCCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAg                                                                                                                                                                             <  2:578583/85‑1 (MQ=255)                                                                                                                                                                              tttCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTa                                                 >  1:67427/1‑199 (MQ=255)                                                                                                                                                                                  aGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGaa                                             <  2:67426/199‑1 (MQ=255)                                                                                                                                                                                        tCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCattatt                                                                                                                                                                      >  2:704716/1‑72 (MQ=255)                                                                                                                                                                                            ttttGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGGATTATTCAtt                                                                                                                                                                  <  1:704726/72‑1 (MQ=255)                                                                                                                                                                                                  gatatctttaaatacggcgatgttcTTCAGAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:497267‑M1/59‑1 (MQ=255)                                                                                                                                                                                                  gaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:616032‑M1/59‑1 (MQ=255)                                                                                                                                                                                                  gaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  2:147670‑M1/59‑1 (MQ=255)                                                                                                                                                                                                      tctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:147671‑M1/22‑84 (MQ=255)                                                                                                                                                                                                      tctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:616023‑M1/22‑84 (MQ=255)                                                                                                                                                                                                      tctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:497260‑M1/22‑84 (MQ=255)                                                                                                                                                                                                                cagcgatttctTTCTCAAGATTGCGAGCACATATGCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:478091‑M1/59‑1 (MQ=255)                                                                                                                                                                                                                 agcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  1:396766‑M1/59‑1 (MQ=255)                                                                                                                                                                                                                  gcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                <  2:618165‑M1/59‑1 (MQ=255)                                                                                                                                                                                                                    gatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:478084‑M1/8‑70 (MQ=255)                                                                                                                                                                                                                     atttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  2:396759‑M1/7‑69 (MQ=255)                                                                                                                                                                                                                      tttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                            >  1:618174‑M1/6‑68 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                         TACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGC  >  CP009273/1412908‑1413326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.