New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1444185 =	29 (0.750)	7 (0.190)	7/298	NT	22.4%	coding (1422/2274 nt)	tynA	tyramine oxidase, copper‑requiring
	?	CP009273	1444646 =	21 (0.580)					coding (961/2274 nt)	tynA	tyramine oxidase, copper‑requiring

CCAGATCGAGGCGGAAATTATAAATATGTTGGTGTGTAGTACCCACGATATTGTGATCGATAAGCGTGCCGTAGCGCGTGTCATCTTTCGCCGTCTCATCGTGCATGGTTTTCGCTTTAACACCTTTCACCGCTTCGATGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATACCGTAGTCACCAGAGTCCAGATACGCTTTAAAGTACCAGCCAATATCAGGATCACCGTAAGGCA  >  CP009273/1443914‑1444417                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                          aacagttaagaatttgccgctgccgtgaataaacgcggtattactgatgcgaaaaaagtgattaccacgccgctgaccgtaggttatttcgatggtgaagatggcctgaaacaagatgcccggttgctcaaagtcatcagctatcttgatgtcggtgatggaaactactgggcacatcccaccgaaaacctggtggcggtcgttgatttagaacagaaaaaactcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacGcc                                                                                                                                                                                                                                         >  1:369350‑M1/272‑274 (MQ=255)    gATCGAGGCGGAAATTATAAATATGTTGGTGTGTAGTACCCACGATATTGTGATCGATAAGCGTGCCGTAGCGCGTGTCATCTTTCGCCGTCTCATCGTGCATGGTTTTCGCTTTAACACCTTTCACCGCTTCGATGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGTTTTCATGGAAGANCCAGTCAANAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCAt                                                                                                                                                                                                                                      >  1:469000/1‑274 (MQ=255)                                               gATATTGTGATCGATAAGCGTGCCGTAGCGCGTGTCATCTTTCGCCGTCTCATCGTGCATGGTTTTCGCTTTAACACCTCTCACCGCTTCGATGCCCGTACCCCCGGCATCGTTGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTAATGATACAGAGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGTGCTGGCCCATTTCCTGATGCTTATACTCGGGCCCGGCATCActgctgtccatt                                                                                                                                                                                           >  1:66004/1‑263 (MQ=255)                                                       taTCGATAAGCGTGCCTTAGCGCGTGTCATCTTTCGCCTTCTCATCGTGCATGGTTTTCGCTTTAACACCTTTCACCGCTTCGATGCCCGTNGCACCGGCATCGATGCCAAAAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgcg                                                                                                                                                                                  <  1:546199/274‑1 (MQ=255)                                                        aagtgattcacccgccgctgaccgtaggttatttcgatggtaaagatggcctgaaacaagatgcccggttgctcaaagtcatcagctatcttgatgtcggtgatggcaactactgggcacatcccatcgaaaaccttgtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgcgc                                                                                                                                                                                 >  1:229131‑M1/217‑275 (MQ=255)                                                           gATAAGCGTGCCGTAGCGCGTGTCATCTTTCGCCGTCTCATCGTGCATGGCTTTCGCTTTAACACCTTTCACCCCTTCGCTGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGGTTTCATGGAAGATCCAGTCAAAAATGTAGTAATAGTTACCCACTGTACTAATCCCGCGCACCACTAACTCCCGGCGTTCGGTAATGACGTTCGGCTGGCCCATTGCTTTAGGATTATACTCCGGCCCGGCATCACGTCCATATACcgcacacgcccgt                                                                                                                                                                               >  2:654851/1‑264 (MQ=255)                                                                            tcttgtCTTCTTTCCCCTTCTCTTCGTGCATGTTTTTCGCTTTACCACCTTTCACCGCTTCGATGCCCGTAGAACCGGAATCGATGCCAATAGTGCCGTTTTCATGGAAGATCCAGNCAAAAATGTATTCATAGTTACCCACTGTACTGATCCAGCGTACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACg                                                                                                                                                             <  1:654860/272‑1 (MQ=255)                                                                                                        cATGGTTTTCGCTTTAACACCTTTCACCGCTTCGATGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCCGTGTCGACGGCGAGGNTTTCagaag                                                                                                                                 >  2:265379/1‑271 (MQ=255)                                                                                                          ctgaaacaagatgcccggttgctcaaagtcatcagctatcttgatgtcggtgatggcaactactgggcacatcccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATAcc                                                                                                                                                                                           <  1:207492‑M1/49‑1 (MQ=255)                                                                                                              tttCGCTTTAACACCTTTCACCGCTTCGATGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCa                                                                                                                           <  1:626113/275‑1 (MQ=255)                                                                                                              aacaagatgcccggttgctcaaagtcatcagctatcttgatgtcggtgatggcaactactgggcacatcccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGa                                                                                                                                                                                       >  2:207488‑M1/163‑215 (MQ=255)                                                                                                                tCGCTTTAACACCTTTCACCGCTTCGATGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATc                                                                                                                                                                   >  2:714292/1‑233 (MQ=255)                                                                                                                    tttAACACCTTTCACCGCTTCGATGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATCGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCa                                                                                                                                                               <  1:714302/233‑1 (MQ=255)                                                                                                                                    agtcatcagctatcttgatgtcggtgatggcaactactgggcacatcccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGCAGCACTGCGTTAGACGGGGCATCttt                                                                                                     <  1:271623‑M1/135‑1 (MQ=255)                                                                                                                                                   gggtgtcggnaatggcaactactgggcacatcacatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagatttaagaaggtccggtagttccggtgccaatgaccgcacGCCCATTGCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTg‑g                                                                                     >  2:271618‑M1/126‑275 (MQ=255)                                                                                                                                                                      tAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATa                                                                  <  1:265384/275‑1 (MQ=255)                                                                                                                                                                           ccGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACAGCGTTAGACGGGGCATCTTTACCACGAGCCATTGTGTG‑GGTTAGGGTggcaatcctg                                                               >  2:329134/1‑264 (MQ=255)                                                                                                                                                                               tttCAGGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCTGTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATAcc                                                                <  1:329140/268‑1 (MQ=255)                                                                                                                                                                                      tcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAgg                                                                                                                                                                             <  2:229278‑M1/63‑1 (MQ=255)                                                                                                                                                                                          aaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGAtc                                                                                                                                                                         >  1:229283‑M1/87‑153 (MQ=255)                                                                                                                                                                                                          aGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACcg                                                                                                                                                                                          >  2:581319/1‑120 (MQ=255)                                                                                                                                                                                                              aTAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGAt                                                                                                                                                                                      <  1:581328/120‑1 (MQ=255)                                                                                                                                                                                                                           gTACTGTTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAANGTTCAAATACCGCGATAGCACGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATACCGTAGTCACCAGAGTCCAGATACGCTTTAAAGTACCAGCCAATATCAGGAt              <  1:555169/274‑1 (MQ=255)                                                                                                                                                                                                                            tACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTccggcccggc                                                                                                                                                                                                           >  2:685494/1‑85 (MQ=255)                                                                                                                                                                                                                            tACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTTCCCATACCGTATTCACCAGAGTCCAGAGACGCCGGAAATTACCAGCCAATATCacaatc             >  2:555160/1‑269 (MQ=255)                                                                                                                                                                                                                               ttaTCCCGCGCACCACTAACTTCCGTCGTTCGGTACTGACGTTGGGCTGGCCCATTTACTGATGCTTATACTCCGGCCCTGCATAACGTTCAAATACCGCTATAGCGCGAGGGATCTCCATCGGCACGCCAGTGCAGTAGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTCACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATACCGTAGTCACCAGAGTCCAGATACGCTTTAAAGTACCAGCCAATATTAGGATCACCg         <  1:709547/273‑1 (MQ=255)                                                                                                                                                                                                                                gATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATaa                                                                                                                                                                                                       <  1:685503/85‑1 (MQ=255)                                                                                                                                                                                                                                 aTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACACCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATACCGTAGTCACCAGAGTCCAGATACGCTTTAAAGTACCAGCCAATATCAGGATCACCGTa       <  1:199561/275‑1 (MQ=255)                                                                                                                                                                                                                                    cAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCCTACCGTAGTCACCAGAGGCCAGATACGCTTGAAAGTACCGGCCAACATCGGGATCACCGTAAgg    >  2:709537/1‑275 (MQ=255)                                                                                                                                                                                                                                      gcgcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTc                                                                                                                                                                                                                                   >  2:676338/1‑51 (MQ=255)                                                                                                                                                                                                                                      gcgcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGTTTTCATTAAGGANCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATACCGTAGTCACAAGAGTCCAGATACGCTTTAAAGTACCAACCAATATCAGGATCACCGTAAGGca  >  1:615341/1‑275 (MQ=255)                                                                                                                                                                                                                                          accacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGa                                                                                                                                                                                                                               <  1:676347/51‑1 (MQ=255)                                                                                                                                                                                                                                           ccacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgc                                                                                                                                                                                   >  2:88594/1‑94 (MQ=255)                                                                                                                                                                                                                                               tAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGa                                                                                                                                                                               <  1:88595/94‑1 (MQ=255)                                                                                                                                                                                                                                                      cGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCa                                                                                                                                                                                                          >  2:236801/1‑60 (MQ=255)                                                                                                                                                                                                                                                          gTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAAc                                                                                                                                                                                                      <  1:236806/60‑1 (MQ=255)                                                                                                                                                                                                                                                                          gggCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGcc                                                                      >  2:148707/1‑171 (MQ=255)                                                                                                                                                                                                                                                                              tGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATa                                                                  <  1:148708/171‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                          CCAGATCGAGGCGGAAATTATAAATATGTTGGTGTGTAGTACCCACGATATTGTGATCGATAAGCGTGCCGTAGCGCGTGTCATCTTTCGCCGTCTCATCGTGCATGGTTTTCGCTTTAACACCTTTCACCGCTTCGATGCCCGTAGCACCGGCATCGATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTG‑GTGAGGTTAGCGTGCCCATACCGTAGTCACCAGAGTCCAGATACGCTTTAAAGTACCAGCCAATATCAGGATCACCGTAAGGCA  >  CP009273/1443914‑1444417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.