New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1444185 =	29 (0.750)	7 (0.190)	7/298	NT	22.4%	coding (1422/2274 nt)	tynA	tyramine oxidase, copper‑requiring
	?	CP009273	1444646 =	21 (0.580)					coding (961/2274 nt)	tynA	tyramine oxidase, copper‑requiring

GGATCACCGTAAGGCACAATCATGCCGCCGAGAGAACCTTCGTACATGACTTTGCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTT  >  CP009273/1444402‑1444916                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                               ggATCACCGTAAGGCACAATCATGCCGCCGAGAGAACCTTCGTACATGACTTTGCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCANGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGAc                                                                                                                                                                                                                                                   <  1:653454/274‑1 (MQ=255)                                                  cTTTGCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCg                                                                                                                                                                                                      >  1:321136/1‑270 (MQ=255)                                                     tGCGTTGGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCATCTTAAATCCTAACGATTTTTTTCCCNTATAAATCAAAAACCTccaccatc                                                                                                                                                                                              >  2:418446/1‑273 (MQ=255)                                                      gCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGccac                                                                                                                                                                                                  <  2:321130/270‑1 (MQ=255)                                                                                              atcGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGTGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGCTTTTTTTCTGTTCTAAATACACTCCCGCCACCAGGTTTTCGATGGGATGTGCCCATTAGTTGCCATCCCCGAcct                                                                                                                                                      >  1:572383/1‑272 (MQ=255)                                                                                               ccaattgctcgtggtaaagatgccccgtctaacgcagtgctccttaatgaaaccatcgccgactacactggcgtgccgatggagatccctcgcgctatcgcggtatttgaacgttatgccgggccggagtataagcatcaggcaatgggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTAAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGTGATGTGCCCAGTAGTTGCCATTNCCgacaccc                                                                                                                                                    >  2:271618‑M2/151‑272 (MQ=255)                                                                                                cGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATc                                                                                                                                                                                                                                        >  1:302789/1‑190 (MQ=255)                                                                                                    ccGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTaa                                                                                                                                                                                                                                    <  2:302783/190‑1 (MQ=255)                                                                                                              aaagatgccccgtctaacgcagtgctgcttaatgaaaccatcgccgactacactggcgtgccgatggagatccctcgcgctatcgcggtatttgaacgttatgccgggccggagtataagcatcaggaaatgggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACt                                                                                                                                     <  1:271623‑M2/140‑1 (MQ=255)                                                                                                                   aTGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAg                                                                                                                                <  1:418453/275‑1 (MQ=255)                                                                                                                                          ccGCCAGTTAATCATTTTGCCAGTAATGGTGTTATTTTTTCCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCNCGGCCATCAAATTGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGCGCATCTTGTTTCAgg                                                                                                          <  1:508100/274‑1 (MQ=255)                                                                                                                                             ccAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTAcc                                                                                                                                                                                                                                                       >  1:472430/1‑130 (MQ=255)                                                                                                                                                 tGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGACGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGAc                                                                                                                                                                                                                                                   <  2:472423/130‑1 (MQ=255)                                                                                                                                                           cGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACAATCGaa                                                                                         >  1:683828/1‑274 (MQ=255)                                                                                                                                                               aGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAAGGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGCTTTTTTTCTGTTTTAAATCAACGACCGCCACCAGCTTTTCGATGGGATGTGCCCATTAGTTGCCATCACAGAAATCAAGATAGCTGAAGACTTTGAGCAACCGGGCATCTGGTTTCAGTCCATCTTTACCATCTaaaaaat                                                                                    >  2:291836/1‑274 (MQ=255)                                                                                                                                                               aGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCAt                                                                                                                                                                                                                                                                       >  2:441890/1‑96 (MQ=255)                                                                                                                                                                 tattgttgtAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACAGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCt                                                                                  <  1:291842/269‑1 (MQ=255)                                                                                                                                                                   aTGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGc                                                                                                                                                                                                                                                                   <  1:441897/96‑1 (MQ=255)                                                                                                                                                                                 aCCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCAtt                                                                                                                                                                                                                                                                      >  1:190978/1‑79 (MQ=255)                                                                                                                                                                                  gatccctcgcgctatcgcggtatttgaacgttatgccgggccggagtataagcatcaggaaatgggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGttt                                                                                                                                                                                           >  1:229283‑M2/68‑153 (MQ=255)                                                                                                                                                                                     tCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCa                                                                                                                                                                                                                                                                  <  2:190975/79‑1 (MQ=255)                                                                                                                                                                                      cctcgcgctatcgcggtatttgaacgttatgccgggccggagtataagcatcaggaaatgggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGa                                                                                                                                                                                       <  2:229278‑M2/90‑1 (MQ=255)                                                                                                                                                                                          gcgctatcgcggtatttgaacgttatgccgggccggagtataagcatcaggaaatgggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACAAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGGGTGAATCACtt                                                         >  1:229131‑M2/60‑275 (MQ=255)                                                                                                                                                                                                tcgcggtatttgaacgttatgccgggccggagtataagcatcaggaaatgggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGtt                                                                                                               >  2:207488‑M2/54‑215 (MQ=255)                                                                                                                                                                                                 atggggagaGGCTTAACCGCCGGGGCAGCGCGGTCACCGCCATCAAATTGGCGTGCGGTTATTGGCACCGAAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGc                                                  <  2:683819/267‑1 (MQ=255)                                                                                                                                                                                                   ttGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGt                                                                                                                                                                                                                                                                          >  1:241090/1‑57 (MQ=255)                                                                                                                                                                                                    ggtatttgaacgttatgccgggccggagtataagcatcaggaaatgggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAg                                                                                                           <  1:207492‑M2/166‑1 (MQ=255)                                                                                                                                                                                                       aTAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCAtt                                                                                                                                                                                                                                                                      <  2:241085/57‑1 (MQ=255)                                                                                                                                                                                                                                                  ggcGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGAGTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGGTGGGATGTGCCCAGTAGTTTCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTCACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTATTCACGGCAGCGGCAAATTCTTAACtgtt  >  1:369350‑M2/4‑274 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                               GGATCACCGTAAGGCACAATCATGCCGCCGAGAGAACCTTCGTACATGACTTTGCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTT  >  CP009273/1444402‑1444916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.