New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1444917 =	13 (0.340)	4 (0.110)	4/294	NT	22.7%	coding (690/2274 nt)	tynA	tyramine oxidase, copper‑requiring
	?	CP009273	1445614 =	15 (0.420)					intergenic (‑8/+240)	tynA/paaZ	tyramine oxidase, copper‑requiring/fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase

TAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGGGTTTGAAGTCCGCGGAAGCTTTAA  >  CP009273/1444688‑1445185                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                             tAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCCGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATAAGTAATACCGCGTTTCGTCACGGCAGCGGCAAATTCATCACTGTTGTTAATAAAGTTCTGCACACAGGCGAAATCATCCAGAAACACAATa                                                                                                                                                                                                                                 >  1:171115/1‑275 (MQ=255)        ttttttCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATg                                                                                                                                                                                                                                                                     <  2:223796/232‑1 (MQ=255)        ttttttCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATg                                                                                                                                                                                                                                                                     >  1:223801/1‑232 (MQ=255)                                                                                               gaCTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTACTAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCCGGAGAGCAGTTTGTTGTTTTGCAGATCCaccacc                                                                                                                                                                     >  1:323144/1‑241 (MQ=255)                                                                                                           tggcacacctgccaaacaacctggtaggtgcaggcaatcccctttgcatcagtactgataatgtgaacctgactaaaccgcccacagagcgcggttgctaacaagaacacaacatctgacgagGTtaataa                                                                                                                                                                                                                                                                       <  1:488472‑M1/8‑1 (MQ=255)                                                                                                                                                                       atgtgaacctgactaaaccgcccacagagcgcggttgctaacaagaacacaacatctgacgagGTTAATAATGTTCTGCACACTGGCGAAATCATcc                                                                                                                                                                                                                                             <  1:402635‑M1/34‑1 (MQ=255)                                                                                                                                                                         gtgaacctgactaaaccgcccacagagcgcggttgctaacaagaacacaacatctgacgagGtt                                                                                                                                                                                                                                                                            <  1:618585‑M1/3‑1 (MQ=255)                                                                                                                                                                           gaacctgactaaaccgcccacagagcgcggttgctaacaagaacacaacatctgacgagGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCa                                                                                                                                                                                                                                         >  2:402628‑M1/60‑97 (MQ=255)                                                                                                                                                                             acctgactaaaccgcccacagagcgcggttgctaacaagaacacaacatctgacgagGt                                                                                                                                                                                                                                                                             >  1:431489‑M1/58‑59 (MQ=255)                                                                                                                                                                             acctgactaaaccgcccacagagcgcggttgctaacaagaacacaacatctgacgagGTtaata                                                                                                                                                                                                                                                                        >  2:618576‑M1/58‑64 (MQ=255)                                                                                                                                                                                    acagtctgaaTACCTAGTTTCTGCACGGCCGCGGCAAATTCTTCACTGTTGTTTATAATGTTTTTCATACTGGCGAAATCAGCCAGCAACATCATACCGTGGTCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTTTTTTGCAGATCCACCACCGCTTCGATGAGATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCTCGGCTGGTCAACCGGTTTGGTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGAt                                              <  2:169864/267‑1 (MQ=255)                                                                                                                                                                                       tCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGc                                                                                                                  >  1:138512/1‑204 (MQ=255)                                                                                                                                                                                           tAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGt                                                                                                              <  2:138511/204‑1 (MQ=255)                                                                                                                                                                                                   cgTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGttt                                                                                                                                                                                           >  2:178249/1‑119 (MQ=255)                                                                                                                                                                                                   cgTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGAATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGACCAGACAGCTTCTTTATCTGGCGGTAGCAggg                                                  >  1:169867/1‑256 (MQ=255)                                                                                                                                                                                                     gcggttgctaacaagaacacaacatctgacgagGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTg                                                                                                                                                                                                          <  1:670922‑M1/69‑1 (MQ=255)                                                                                                                                                                                                       tcttcACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTttgttg                                                                                                                                                                                       <  1:178252/119‑1 (MQ=255)                                                                                                                                                                                                         ttgctaacaagaacacaacatctgacgagGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAg                                                                                                                                                                                                      >  2:670913‑M1/30‑102 (MQ=255)                                                                                                                                                                                                              ggCAGCGGCAAATTATTCACTGTTGTTACTAATGTTCTGCACACGGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGAGGTCGGCTTAGCGCGGCTGNTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCCGGGAGATCTCAGTAAAACGGGCATTggggt                       >  1:513501/1‑270 (MQ=255)                                                                                                                                                                                                                   cGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTAt                                                                 >  2:121490/1‑225 (MQ=255)                                                                                                                                                                                                                       aaaTTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTgg                                                             <  1:121491/225‑1 (MQ=255)                                                                                                                                                                                                                                 cTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTTNTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGACTTGGCTTTGAAGCCCGCGGAAGCTTTaa  <  1:492423/274‑1 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                             TAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGGGTTTGAAGTCCGCGGAAGCTTTAA  >  CP009273/1444688‑1445185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.