| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1444917 = | 13 (0.340) | 4 (0.110) | 4/294 | NT | 22.7% | coding (690/2274 nt) | tynA | tyramine oxidase, copper‑requiring |
| ? | CP009273 | 1445614 = | 15 (0.420) | intergenic (‑8/+240) | tynA/paaZ | tyramine oxidase, copper‑requiring/fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase | |||||
CACGTACGCGCCATCTTTAATCAGGGTAAAGAGCTGGGCGTAGTCGTCCCACTGCACATCGGCACCAAATTCTTTAAGCGTTTTATCCATTGGCACCATATGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATG > CP009273/1445400‑1445781 | cccGTACGCGCCTTCTTTAATCAGGGTAAAGAGCTGGGCGTAGTCGTCCCACTGCACATCGGCACCAAATTCTTTAAGCGTTTTATCCATTGGCACCATATGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTcac < 1:392599/273‑1 (MQ=255) gggCGTAGTCGTCCCACTGCACATCGGCACCAAATTCTTTAAGCGTTTTATCCATTGGCACCATATGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGa > 1:358250/1‑188 (MQ=255) gTAGTCGTCCCACTGCACATCGGCACCAAATTCTTTAAGCGTTTTATCCATTGGCACCATATGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGAtgtt < 2:358244/188‑1 (MQ=255) tcCCACTGCACATCAGCACCAAATTCTTCAAGCGTTTTATCCATTGGCACCATATGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATGAACCTCGTCAGATGTTGTNTTCTTGTTAGCAACAGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGgtt > 1:529016/1‑274 (MQ=255) gtacaTCGGCACCAAATTCTTTATGCGTTTTATCCATTGGCACCATAGGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAACGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCa < 1:368739/273‑1 (MQ=255) acaTCGGCACCAAATTCTTTAAGCGGTTTATCCATGGGCACCATATGCTGTTCGCCTCCGTTGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGTGTTGTTTTACGGGCAGAATACAGAGAGTGGTTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTCTCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTTGCAg < 1:18478/274‑1 (MQ=255) atatGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGa > 1:590024/1‑257 (MQ=255) tatGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGAtgttgt > 1:681172/1‑131 (MQ=255) cgcTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTc < 2:681163/131‑1 (MQ=255) ccccaccCTGGGCANTTCCCGTCTATTGCCAGGCGAAACGTATGGCGACTGCCAACGCTAGGGTTGTTTTACGGGCAGAATACAGCGAGGGGCTTCCCATGATTAACCTCGTCAGATGTTGTGTTCTTGTTAACAACCGCGCGCTGTGGGCTGGTTAGTCTTGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGCTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATg < 2:529008/273‑1 (MQ=255) caccacCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGAAGCCCTGAAAATAg > 1:34640/1‑261 (MQ=255) caccGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACAtt < 1:144970/168‑1 (MQ=255) ggCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCGCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATAc < 1:50247/210‑1 (MQ=255) ctggcaacccattaaagacgcccacggtatggtgttgctggatgatttcgccagtgtgcagaacattattaacCTCGTCAGATGTTGTGTTCTTGTTAGCaa > 2:670913‑M2/74‑102 (MQ=255) caacccattaaagacgcccacggtatggtgttgctggatgatttcgccagtgtgcagaacattattaacCTCGTCAGATGTTGTGTTCTTGTTAGCAACcgc < 1:670922‑M2/33‑1 (MQ=255) tgctggatgatttcgccagtgtgcagaacattattaacCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTc > 2:402628‑M2/39‑97 (MQ=255) ggatgatttcgccagtgtgcagaacattattaacCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACAt < 1:402635‑M2/63‑1 (MQ=255) ggggCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCt > 2:550039/1‑117 (MQ=255) ggCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGAt > 2:343412/1‑173 (MQ=255) cTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAg > 1:710121/1‑97 (MQ=255) cTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCa < 1:550048/117‑1 (MQ=255) tCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTac < 1:343418/173‑1 (MQ=255) cccATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGCTGCTAAGGGGCTTGCCTGCACCTGc > 1:176095/1‑112 (MQ=255) cccATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGgtgt > 2:488465/1‑131 (MQ=255) ccATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGa < 2:710111/97‑1 (MQ=255) ttattaacCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTACCAGGTTGTTTGGCAGGTGTGCCa < 1:488472‑M2/123‑1 (MQ=255) tattaacCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGt > 2:618576‑M2/8‑64 (MQ=255) aacCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTcac < 1:618585‑M2/61‑1 (MQ=255) acCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGt > 1:431489‑M2/3‑59 (MQ=255) | CACGTACGCGCCATCTTTAATCAGGGTAAAGAGCTGGGCGTAGTCGTCCCACTGCACATCGGCACCAAATTCTTTAAGCGTTTTATCCATTGGCACCATATGCGCTTCACCACCGTGGGCAAATACCGGCGCTTGCCAGGCGAAACTTAAGGCGACTGCCAACGCCAGGGTTGTTTTACGGGCAGAATACAGAGAGGGGCTTCCCATTATTAACCTCGTCAGATGTTGTGTTCTTGTTAGCAACCGCGCTCTGTGGGCGGTTTAGTCAGGTTCACATTATCAGTACTGATGCAAAGGGGATTGCCTGCACCTGCCAGGTTGTTTGGCAGGTGTGCCAGCTTTTCATACAGTGGATGCCCTGAAAATAGATGTACACATCATG > CP009273/1445400‑1445781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |