New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1450888	20 (0.520)	5 (0.140)	5/290	NT	21.5%	coding (202/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
	?	CP009273	= 1451154	18 (0.510)					coding (468/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component

ATTGTACCGCTGCGATAGTTGCCGCGAACCTTTCGATTATTTCAAATGTATTTGAGGATGCCATGACAACGTTTCATTCCTTAACAGTGGCAAAAGTCGAGTCGGAAACCCGTGATGCGGTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGC  >  CP009273/1450625‑1451142                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                               aTTGTACCGCTGCGATAGTTGCCGCGAACCTTTCGATTATTTCAAATGTATTTGAGGATGCCATGACAACGTTTCATTCCTTAACAGTGGCAAAAGTCGAGTCGGAAACCCGTGCTGCGGTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCATTGATGGTAAAGAATGACGCAGTTGTAACTCCCTTGGCCGCAGATATAGGCCTTGCAAAATTTgtttttct                                                                                                                                                                                                                                                     >  2:583928/1‑269 (MQ=255)                              cgttctatttgttCAAATGTATGTGAGGATGCCATGACAACGTTTCATTCCTTAACAGTGGCAAAAGTCGAGTCGGAAACCCGTGATGCGGTGACCATTACCTTTGCGGTGCCCCCGCCTTTGCCGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCGATTGAAGGCGGACGTTtct                                                                                                                                                                                                                         <  1:583937/263‑1 (MQ=255)                                                                        tttCATTCCTTAACAGTGGCAAAAGTCGAGTCGGAAACCCGTGATGCGGTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCCTTTGCCGCACCTATCTGCCTGGCGAAAcatcatgctctggctggtatggttaacgtagatcaggctgaactgcctttcagataaggtttgtaaaggtgtggcgataat                                                                                                                                                                               >  1:91132‑M1/1‑193 (MQ=255)                                                                                                                                 aCCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCGGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGgc                                                                                                                      >  1:387508/1‑274 (MQ=255)                                                                                                                                       gCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATc                                                                                                                                                                                                  >  2:29808/1‑192 (MQ=255)                                                                                                                                         ggtgcgccgcgctttgctggacgCGGATCGCTTTAGCTCCGTTCGACATTTGGCCTTAAGTGGCTGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAAcatcgtgctctggctggtacggttaccgtagatcagggttaactgactttcaggctaggattgtaaagtggtggcgataatcgccagcatgggcgtaatacctgatcctgctgcaattgacagatagcgcccctggcgttcggcctg                                                                                                             <  2:91131‑M1/264‑148 (MQ=255)                                                                                                                                           tGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGcc                                                                                                                                                                                              <  1:29808/192‑1 (MQ=255)                                                                                                                                                      ttGCAGGAGGCGTATGGCTTTTGGCCCGAGCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGNGTATGACGATGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCAATCTGGCAATTGaagcag                                                                                                 >  1:493711/1‑274 (MQ=255)                                                                                                                                                         cAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGACGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCTCAGCTATCTGCCTGGCGAAAcatcatgctctggctggtacggttaccgtagatcagggtgaactgactttcaggctcggtttgtaaagtggtggcgataatcaccagcatt                                                                                                                                                                     <  1:645634‑M1/203‑92 (MQ=255)                                                                                                                                                          aggaggCGTATCGCTTTCGCCCCTGTCAACATTTGACCTTAAAAGCCAGCTTGGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATc                                                                                             <  1:409631/274‑1 (MQ=255)                                                                                                                                                                                            gACCTTAAAAGCCAGCTTTGATGGTGAAGACTTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGACCGCCAGGGGCGCTATCTGGCAATTGCCGCAGGATCAGGTATTACGCAACTGCTGGCGATTATCGcccac                                                           >  1:100030/1‑271 (MQ=255)                                                                                                                                                                                               cTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTAACGccacca                                                          >  1:240139/1‑272 (MQ=255)                                                                                                                                                                                                         aGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAgg                                                                                                                                                                                           >  2:332674/1‑133 (MQ=255)                                                                                                                                                                                                             ttGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTAt                                                                                                                                                                                       <  1:332680/133‑1 (MQ=255)                                                                                                                                                                                                                     gaagaaTTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAg                                                                                                                                                                                            >  1:721278/1‑120 (MQ=255)                                                                                                                                                                                                                      aagaaTTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTccc                                                                                                                                                                                                                      >  2:19428/1‑93 (MQ=255)                                                                                                                                                                                                                         aaTTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTa                                                                                                                                                                                        <  2:721268/120‑1 (MQ=255)                                                                                                                                                                                                                          aTTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTa                                                                                                                                                                                                                  <  1:19428/93‑1 (MQ=255)                                                                                                                                                                                                                                  gttgttACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTATTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAgg                                                                                                                                                             <  1:244737/138‑1 (MQ=255)                                                                                                                                                                                                                                   ttgttACTCCATTTGCCGCAGCTATCTGCCTGGCGAAAcatcatgctctggctggtacggttaccgtagatcaggg                                                                                                                                                                                                                          >  2:584835‑M1/1‑38 (MQ=255)                                                                                                                                                                                                                                       tACTCCATTTGCCGCAGCTATCTGCCTGGCGAAAcatcatgctctggctggtacggttaccgtagatcagggtgaa                                                                                                                                                                                                                      <  1:584844‑M1/76‑43 (MQ=255)                                                                                                                                                                                                                                              tttGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGACCACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGCACGCCAGGGGCGCTATCTGGCACTTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTACCGCCACCACTTTACAACCCGAGCCTGAAAGCCAGTTCACCCCCGTCTAACGTAAccc         >  2:220972/1‑273 (MQ=255)                                                                                                                                                                                                                                                  gcccggttttCTGCCGGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCANGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTAcc     <  1:549635/265‑1 (MQ=255)                                                                                                                                                                                                                                                    gCAGCTATTTGACTGGCGAAATTAGTGTGGCGGGGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGGATTTCTGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTAccagc  <  1:621844/275‑1 (MQ=255)                                                                                                                                                                                                                                                      aGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATc                                                                                                                                                                                                  >  2:47325/1‑81 (MQ=255)                                                                                                                                                                                                                                                          aTCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGcc                                                                                                                                                                                              <  1:47325/81‑1 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                               ATTGTACCGCTGCGATAGTTGCCGCGAACCTTTCGATTATTTCAAATGTATTTGAGGATGCCATGACAACGTTTCATTCCTTAACAGTGGCAAAAGTCGAGTCGGAAACCCGTGATGCGGTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGC  >  CP009273/1450625‑1451142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.