New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1450888	20 (0.520)	5 (0.140)	5/290	NT	21.5%	coding (202/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
	?	CP009273	= 1451154	18 (0.510)					coding (468/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component

TGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATGAGGCATTTATTTGTGGTCCGGCGGCGATGATGGATGACGCGGAAACCGCCTTAAAAGCACTGGGAATGCCAGATAAAACCATTCATCTGG  >  CP009273/1450895‑1451410                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                 tgGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGAAGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTg                                                                                                                                                                                                                                                   <  1:220977/275‑1 (MQ=255)     ggTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCGATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGAATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAg                                                                                                                                                                                                                                               <  1:277927/275‑1 (MQ=255)                                                                                        cGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGCTCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCTCCCTGATCTACGTTAACCGTACCAGCCAGAGCATGCTGTTTCGACAGGCACTGGCAGCCCTGAAAGa                                                                                                                                                                                                                                     >  2:643187/1‑202 (MQ=255)                                                                                            ggggCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACaaa                                                                                                                                                                                                                                 <  1:643196/202‑1 (MQ=255)                                                                                                                 gCAGGCCGAACGCCACGGGCGCTCTCTTGCAATTGCATCAGGTTCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGt                                                                                                                                   <  2:240134/275‑1 (MQ=255)                                                                                                                  cAGGCCGAACGCCAGGGGCGCTATCTGTCAATTGCAGCAGGATCAGGTATTACGCCCATGCTGGCGATTATCGCCACCACTTTACAATCCTAGCCTGAAAGTCAGTTAACCCTGATCTACGGTAACCGTACCAGCCAGAGCACGATGtttcgccaggcagatagctgcggcaaatggagtaacaacggcgtaattcttcaccatcaaagcagccacttaaggccaaatgtcgaacggagctaaagcgatccgcgtccagcaaagcgcggcgcacc                                                                                                                                  <  2:91131‑M2/275‑129 (MQ=255)                                                                                                                                                             taGGTGTTACGAGAGTGCTGTCTAATATCCCCACCAATTTCCCAACCGTGCCGGAAAGTAAGTTAACCCTGATTTATGGTAACCGTACCAGCCAGAGCATGATGTGTCGCCAGGCACTGGCAGAGCTGAAAGACAAATATCCTCAGAGTTTTCAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATGAGGCa                                                                                       <  2:493704/274‑1 (MQ=255)                                                                                                                                                                    tACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAatat                                                                                                                                                                                                                              >  2:631044/1‑133 (MQ=255)                                                                                                                                                                        ccAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTc                                                                                                                                                                                                                          <  1:631053/133‑1 (MQ=255)                                                                                                                                                                          aaTGCTGGTGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGtttcgccaggcagatagctgaggcaaatggagtaacaacggcgtaattcttcaccgtcaaagctggcttttaaggtcaaatgttgaccggggcgaaagcgatacgcctcctg                                                                                                                                                  <  1:645634‑M2/203‑113 (MQ=255)                                                                                                                                                                                 gCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGAc                                                                                                                                                                                                                                             >  2:338337/1‑105 (MQ=255)                                                                                                                                                                                    aTTATCGCCACACCTTTACAAACCTTATCTGAAAGGCAGTTCAGCCTGATCTACGTTAACCATACCAGCCAGAGCATGATGtttcgccaggcagataggtgcggcaaagggagtaacaacggcgtaattcttcaccatcaaagctggcttttaaggtcaaatgttgaccggggcgaaagcgatacgcctcctgcaaaggctggggcaccgcaaaggtaatggtcaccgcatcacgggtttccgactcgacttttgccactgttaaggaatgaaa                                                                 >  1:91132‑M2/1‑81 (MQ=255)                                                                                                                                                                                     ttATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGa                                                                                                                                                                                                                                         <  1:338343/105‑1 (MQ=255)                                                                                                                                                                                                         aCCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTAc                                                                                                                                      >  2:424251/1‑184 (MQ=255)                                                                                                                                                                                                            gAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGCTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCt                                                                                                                                                                                                                           >  2:721699/1‑96 (MQ=255)                                                                                                                                                                                                             aGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTc                                                                                                                                  <  1:424258/184‑1 (MQ=255)                                                                                                                                                                                                                cTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGCTTCGCCAGGCACTGGCAGACCTGAAAGACAACTATCCTCAGc                                                                                                                                                                                                                       <  1:721709/96‑1 (MQ=255)                                                                                                                                                                                                                           ttCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGtttcgccaggcagatagctgcggcaaatggagta                                                                                                                                                                                                                                <  1:584844‑M2/76‑35 (MQ=255)                                                                                                                                                                                                                               cccTGATCTACGGTAACCGTACCAGCCAGAGCATGATGtttcgccaggcagatagctgcggcaaatggagtaacaa                                                                                                                                                                                                                            >  2:584835‑M2/1‑38 (MQ=255)                                                                                                                                                                                                                                ccTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATc                                                                                                                                                                                                                             >  1:58931/1‑74 (MQ=255)                                                                                                                                                                                                                                    aTCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCa                                                                                                                                                                                                                         <  2:58930/74‑1 (MQ=255)                                                                                                                                                                                                                                              aCCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGc                                                                                                                                                                    >  1:213839/1‑117 (MQ=255)                                                                                                                                                                                                                                                  tACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCa                                                                                                                                                                <  2:213835/117‑1 (MQ=255)                                                                                                                                                                                                                                                   aCCAGCCAGAGCATGATGTTTCGCAAGGAACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATNAGGCATTTATTTGTGGTCCGGCGGCGATGATGGATGACGCGGAAACCGCCTTAAAAGCACTGGGAATGCCAGATAAAACCATTCATCTgg  >  1:492296/1‑274 (MQ=255)                                                                                                                                                                                                                                                                 gatgTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAg                                                                                                                                                                                                                        >  1:410121/1‑46 (MQ=255)                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                 TGGCGGTGAAAGCCATTGAAGGCGGACGTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGACGCTGGAGGTCATGGTGCCGCAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATGAGGCATTTATTTGTGGTCCGGCGGCGATGATGGATGACGCGGAAACCGCCTTAAAAGCACTGGGAATGCCAGATAAAACCATTCATCTGG  >  CP009273/1450895‑1451410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.