New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1577603 =	25 (0.650)	4 (0.100)	4/312	NT	13.6%	coding (342/762 nt)	ydeO	UV‑inducible global regulator, EvgA‑, GadE‑dependent
	?	CP009273	1578335 =	26 (0.680)					intergenic (‑119/+129)	safA/ydeP	two‑component system connector membrane protein, EvgSA to PhoQP/putative oxidoreductase

TGAACCTTCTACGCGTATCAAATTTTTTGCGTGCTGCATTCTTGCATCTAAAAGAATCTGTGAGAATGTCGTTTGCTCTTGCTTAAGTTTTTTCTTCAACAGGCTTTCACTGATGTACAGGCAGTCACAAATATCTTTCAGCTTCCATGGGTGCGCCGGCTTCATGTTGACAATATTTCTCACTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTAAAATGCCGCTCATAAGGTTCAAAATGCGTACGAACAGCGTTATCTACCATCAGGATCTCG  >  CP009273/1577348‑1577861                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                   tGAACCTTCTACGCGTATCAAATTTTTTGCGTGCTGCATTCTTGCATCTAAAAGAATCTGTGAGAATGTCGTTTGCTCTTGCTTAAGTTTTTTCTTCAACAGGCTTTCACTGATGTACAGGCAGTCACAAATATCTTTCAGCTTCCATGGGTGCGCCGGCTTCATGTTGACAATATTTCTCACTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGTCAAGAAAAAACCAAAAGtt                                                                                                                                                                                                                                                 >  1:156343/1‑275 (MQ=255) tGAACCTTCTACGCGAATCAAATCCTTTGCGTGCTGCATTCTTGCATCTAAAAGAATCTGTGAGAATGTCGTTTGCTCTTGCTTAAGTTTTTTCTTCAACAGGCTTTCACTGATGTAAAGGCAGTCACAAATATCTTTCAGCTTCCATGGGTGCGCCGGCTTCATGTTGACAATATTTCTCACNTTCCCAGACACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAACAATAGAAAGGAAAAAAAAAAGCAAAAGtg                                                                                                                                                                                                                                                 >  1:512206/1‑274 (MQ=255)   aaCCTTCTACGCGTATCAAATTTTTTGCGTGCTGCATTCTTGCATCTAAAAGAATCTGTGAGAATGTCGTTTGCTCTTGCTTAAGTTTTTTCTTCAACAGGCTTTCACTGATGTACAGGCAGTCACAAATATCTTTCAGCTTCCATGGGTGCGCCGGCTTCATGTTGACAATATTTCTCACTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGAAAGACAAGAAAAAAGCAAAAGTTca                                                                                                                                                                                                                                               >  1:585977/1‑274 (MQ=255)                           ttGCGTGCTGCATTCTTGCATCTAAAAGAATCTGTGAGAATGTCGTTTGCTCTTGCTTAAGTTTTTTCTTCAACAGGCTTTCACTGATGTACAGGCAGTCACAAATATCTTTCAGCTTCCATGGGTGCGCCGGCTTCATGTTGACATTATTTATCACTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACCGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATAGCGttct                                                                                                                                                                                                                       >  1:625520/1‑275 (MQ=255)                                                      gANTCTGTGATAGTATCGGTTGCTTTTGCTTAATTGTTTTCTTCAACCGGCTTTCTCTGATGTACAGGCAGTCACAAATATCTTGCAGTTTCCATGGGTGCGCCGGCTTCATGTTGACAATATTTCTCACTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAAtcatttca                                                                                                                                                                                            <  2:512199/275‑1 (MQ=255)                                                                                                                            gTCACAAATATCTTTCAGCTTCCATGGGTGCGCCGGCTTCATGTTGACAATATTTCTCACTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGa                                                                                                                      >  2:290693/1‑275 (MQ=255)                                                                                                                                  aaTTTCTTTCAGCTTCCAGGGGTGCGCCGGCTTTATTTTGACAATATTTCTCACTTGCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTa                                                                                                                 <  2:156340/274‑1 (MQ=255)                                                                                                                                                                 agcagaagaattcctcattgactattatttcgcaatttgctcacatggattaaattaaactacatactataagatataaacttctgcctacagctGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTc                                                                                 <  2:8040‑M1/180‑1 (MQ=255)                                                                                                                                                                                   tgactattatttcgcaatttgctcacatggattaaattaaactacatactataagatataaacttctgcctacagctGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGNATTGTAGATATTTTTTAATGCTATTTTCATTAAATCCTATTTCttt                                                               <  2:438326‑M1/198‑1 (MQ=255)                                                                                                                                                                                      aCTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTaaa                                                            >  2:705920/1‑275 (MQ=255)                                                                                                                                                                                          tatttcgcaatttgctcacatggattaaattaaactacatactataagatataaacttctgcctacagctGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGACGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTAAAATGc                                                        >  1:438333‑M1/71‑275 (MQ=255)                                                                                                                                                                                             ttcgcaatttgctcacatggattaaattaaactacatactataagatataaacttctgcctacagctGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTAAAATGCCGc                                                     >  1:8040‑M1/68‑275 (MQ=255)                                                                                                                                                                                                   cGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTAAAATTCCGCTCATaa                                               <  1:705930/275‑1 (MQ=255)                                                                                                                                                                                                          cacaCCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAg                                                                                                                                                                               >  2:675077/1‑140 (MQ=255)                                                                                                                                                                                                              ccGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCgg                                                                                                                                                                           <  1:675086/140‑1 (MQ=255)                                                                                                                                                                                                                           gtgtAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATgg                                                                                        >  2:146579/1‑210 (MQ=255)                                                                                                                                                                                                                            tgtAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATc                                                                                                                                                                                  >  2:605681/1‑119 (MQ=255)                                                                                                                                                                                                                              tAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCCTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATAttt                                                                                                >  1:409903/1‑199 (MQ=255)                                                                                                                                                                                                                               aaTGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTAtt                                                                                    <  1:146580/210‑1 (MQ=255)                                                                                                                                                                                                                                aTGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGt                                                                                                                                                                              <  1:605690/119‑1 (MQ=255)                                                                                                                                                                                                                                 tGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATgatgat                                                                                                                                                                                                                               >  1:119162/1‑69 (MQ=255)                                                                                                                                                                                                                                  gAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCCTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTa                                                                                            <  2:409896/199‑1 (MQ=255)                                                                                                                                                                                                                                   aaaCCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAg                                                                                                                                                                               >  2:550497/1‑115 (MQ=255)                                                                                                                                                                                                                                   aaaCCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTg                                                                                                                            >  2:572693/1‑166 (MQ=255)                                                                                                                                                                                                                                     aCCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCg                                                                                                                                                                                                                           <  2:119161/69‑1 (MQ=255)                                                                                                                                                                                                                                       cTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCgg                                                                                                                                                                           <  1:550506/115‑1 (MQ=255)                                                                                                                                                                                                                                       cTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTg                                                                                                                        <  1:572702/166‑1 (MQ=255)                                                                                                                                                                                                                                              tGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTAAAATGCCGCTCATAAGGTTCAAAATGCGTACGAACAGCGTTATCTACCATCAGGAtct    <  1:290699/275‑1 (MQ=255)                                                                                                                                                                                                                                                cGGCATAAATAGACATGAAAGAAAAAAGCTAAAGTTTTGAAAAATGTTGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTCCAAACCTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTAAAATGCCGCTCATAAGGTTCAAAATGCGTACGAACAGCGTTATCTACCATCAGGATCTCg  <  1:639732/275‑1 (MQ=255)                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                   TGAACCTTCTACGCGTATCAAATTTTTTGCGTGCTGCATTCTTGCATCTAAAAGAATCTGTGAGAATGTCGTTTGCTCTTGCTTAAGTTTTTTCTTCAACAGGCTTTCACTGATGTACAGGCAGTCACAAATATCTTTCAGCTTCCATGGGTGCGCCGGCTTCATGTTGACAATATTTCTCACTTTCCCAGAAACGGATAGCACACCGTTAGTTAATAGTGTAATGAAACCTTTGCATGCGGCAAAAATAGACAGGCAAGAAAAAAGCAAAAGTTCTGAAAAATTATGATGATTGCGTTCTTCCGAGTTGAGATAAGCAATCATTTCATTAAGCAATCCAGTCGGTACATTTGAAGCACGTAAAAACTTCGCAGGAACAGGCACCGTCACTGTCTGGATGTTAGTGCATTGTAGATATTTTTTAATGGTATTTTCAGTAAATCCGATCTCTTTAAAATGCCGCTCATAAGGTTCAAAATGCGTACGAACAGCGTTATCTACCATCAGGATCTCG  >  CP009273/1577348‑1577861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.