New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1577603 =	25 (0.650)	4 (0.100)	4/312	NT	13.6%	coding (342/762 nt)	ydeO	UV‑inducible global regulator, EvgA‑, GadE‑dependent
	?	CP009273	1578335 =	26 (0.680)					intergenic (‑119/+129)	safA/ydeP	two‑component system connector membrane protein, EvgSA to PhoQP/putative oxidoreductase

TAAGTGTCAGTAATAAGACAACCACAATTGCAGACATGATTTCTTTATAGTTGTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAACCGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTG  >  CP009273/1578123‑1578579                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     tagagacaggttataaGACTACCACAATTGCAGATATTATTTCTGTATAGTTGTCGCTTTGCGTGATTTTGTTTTTCACAGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTGGTTTAATTTAATCCATGTGAGCAGATTg                                                                                                                                                                                        <  1:698421/263‑1 (MQ=255)     gcggcattttaaagagatcggatttactgaaaataccattaaaaaatatctacaatgcactaacatccagacagtgacggtgcctgttcctgcgaagtttttacgtgcttcaaatgtaccgactggattgcttaatgaaatgattgcttatctcaactcggaagaacgcaatcatcataatttttcagaacttttgcttttttcttgcAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGaa                                                                                                                                                                                    >  1:8040‑M2/209‑275 (MQ=255)        gcattttaaagagatcggatttactgaaaataccattaaaaaatatctacaatgcactaacatccagacagtgacggtgcctgttcctgcgaagtttttacgtgcttcaaatgtaccgactggattgcttaatgaaatgattgcttatctcaactcggaagaacgcaatcgtcataatttttcagaacttttgcttttttcttgcAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAaata                                                                                                                                                                                 >  1:438333‑M2/206‑275 (MQ=255)               aaagaaataggatttaatgaaaatagcattaaaaaatatctacaatncactaacatccagacagtgacggtgcctgttcctgcgaagtttttacgtgcttcaaatgtaccgactggattgcttaatgaaatgattgcttatctcaactcggaagaacgcaatcatcataatttttcagaacttttgcttttttcttgcAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCa                                                                                                                                                                          <  2:438326‑M2/77‑1 (MQ=255)                     tactcaATTGAAGACATTATTTCTTTATAGTTGTTTCTTTGTGTGATTTTGTTGTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAgg                                                                                                                                                                    <  2:38417/271‑1 (MQ=255)                     aCCACAATTGCAGACATGATTTCTTTATAGTTGTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATGGTTAATCAGTATGCTTAATATAACAGGCTGAAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGTGAGAAGTTGATAGCTTATAGTATGTCGTTTAATTTAATCAAGCTTAGAAGATTACGAAATAATAgcagtctctt                                                                                                                                                                    >  2:698412/1‑266 (MQ=255)                     aCCACAATTGCAGACATGATTTCTTTATAGTTGTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAg                                                                                                                                                                                                                                               >  1:23105/1‑200 (MQ=255)                     aCCACAATTGCAGACATGATTTCTTTATAGTTGTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGaa                                                                                                                                                                                                                                         >  1:125091/1‑206 (MQ=255)                         caATTGCAGACATGATTTCTTTATAGTTGTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAg                                                                                                                                                                                                                                           <  2:23105/200‑1 (MQ=255)                         caATTGCAGACATGATTTCTTTATAGTTGTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGttt                                                                                                                                                                                                                                     <  2:125090/206‑1 (MQ=255)                                 gaaaataccattaaaaaatatctacaatgcactaacatccagacagtgacggtgcctgttcctgcgaagtttttacgtgcttcaaatgtaccgactggattgcttaatgaaatgattgcttatctcaactcggaagaacgcaatcatcataatttttcagaacttttgcttttttcttgcAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTctgct                                                                                                                                                        <  2:8040‑M2/95‑1 (MQ=255)                                                     gTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGaa                                                                                                                                                                                                                                         >  1:663659/1‑174 (MQ=255)                                                         ctTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGttt                                                                                                                                                                                                                                     <  2:663650/174‑1 (MQ=255)                                                             gCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAataata                                                                                                                                                                              >  1:94831/1‑225 (MQ=255)                                                                 gATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCa                                                                                                                                                                          <  2:94830/225‑1 (MQ=255)                                                                                            catTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGATTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGaa                                                                                                                                                                                                                                         >  2:228620/1‑135 (MQ=255)                                                                                                tCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGttt                                                                                                                                                                                                                                     <  1:228625/135‑1 (MQ=255)                                                                                                   aaTATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGaa                                                                                                                                                                                                                                         >  2:364380/1‑128 (MQ=255)                                                                                                       tGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGttt                                                                                                                                                                                                                                     <  1:364386/128‑1 (MQ=255)                                                                                                                  cGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAg                                                                                                                                                                                                                                               >  2:681204/1‑107 (MQ=255)                                                                                                                   ggATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAg                                                                                                                                                                                                                                           >  2:91880/1‑110 (MQ=255)                                                                                                                      tAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAg                                                                                                                                                                                                                                           <  1:681213/107‑1 (MQ=255)                                                                                                                       aaCGTTAAAAATCGTTAATCAGTATGCTTAAGATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGt                                                                                                                                                                                                                                       <  1:91881/110‑1 (MQ=255)                                                                                                                               aaaTCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGaa                                                                                                                                                                                                                                         >  2:430644/1‑100 (MQ=255)                                                                                                                                   cGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGttt                                                                                                                                                                                                                                     <  1:430651/100‑1 (MQ=255)                                                                                                                                                           cAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAg                                                                                                                                                                                                                                               >  1:458405/1‑66 (MQ=255)                                                                                                                                                               cTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAg                                                                                                                                                                                                                                           <  2:458398/66‑1 (MQ=255)                                                                                                                                                                tGGAGAAAAGAGGAAATCGGGCTGGTGCTTCAGTACTGAGCGGCGTTTCTTCCAGCTGTAGGCAGaa                                                                                                                                                                                                                                         >  2:509469/1‑67 (MQ=255)                                                                                                                                                                               aTAGGACTGGTTTTTTAGTACTGAGGGGAGTTTCTTACAGCTGTAGGAAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAACCGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGt          <  1:216412/275‑1 (MQ=255)                                                                                                                                                                                        gTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAACCGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCACGTGTTAGCATGGGATTCGATTCTGGAAAGTAGGTCACCaaaa  >  2:216408/1‑271 (MQ=255)                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     TAAGTGTCAGTAATAAGACAACCACAATTGCAGACATGATTTCTTTATAGTTGTCTCTTTGCGTGATTTTGTTTTTCACTGTGGTCGCATGCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAACCGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTG  >  CP009273/1578123‑1578579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.