New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1623330 =	28 (0.730)	4 (0.110)	4/306	NT	15.6%	intergenic (+35/‑142)	rspR/ydfZ	transcriptional repressor for rspAB/selenoprotein, function unknown
	?	CP009273	1623608 =	16 (0.430)					coding (137/204 nt)	ydfZ	selenoprotein, function unknown

AACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATA‑TTTTCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGG  >  CP009273/1623057‑1623575                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                      acaaagtagtgccgaagggaaagcgcgcgtccagtcattgctggcgattaaggcgatctttggtgatgatttgccagacaatagtttgtttactgcaagagtgacggaaacgtacttgtctttattagcgcatggcgcgaaagcgaccgtggcaaaatattccgtgaagtaaaaaagcaatgccgccatcggcggcattcacacgcttagttcatgccgagacgaatcaggtccagtggtgccagtttctcttcacaaccttcaacaactacggt                                                                                                                                                                                                                                                       <  1:336924‑M1/1‑1 (MQ=255)     agtagtgccgaagggaaagcgcgcgtccagtcattgctggcgattaaggcgatctttggtgatgatttgccagacaatagtttgtttactgcaagagtgacggaaacgtacttgtctttattagcgcatggcgcgaaagcgaccgtggcaaaatattccgtgaagtaaaaaagcaatgccgccatcggcggcattcacacgcttagttcatgccgagacgaatcaggtccaggggtgccagtttcccttcacaaccttcaacaactacggattta                                                                                                                                                                                                                                                   <  2:168442‑M1/5‑2 (MQ=255)      aagtggaaaaataTTGAGACCCGGAAAGCGGCCGTTGATTCCGTTCTCTCTATGTGTTTCGACCCCTTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATA‑TTTTCTCTGCCCTGCAAAAACGTTATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTccc                                                                                                                                                                                                                                                 <  2:591066/263‑1 (MQ=255)       cGTGGGATACCAGTGATAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTGCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATA‑TTTTCTCTGCACTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTcccc                                                                                                                                                                                                                                                <  1:73077/275‑1 (MQ=255)                    tGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGCTA‑TTTTCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACAGTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATACAGGGTGAGAGGCttt                                                                                                                                                                                                                                                     >  1:591075/1‑257 (MQ=255)                                                                               caccaGAAATGCTGTTACGCTATCATCTTGATA‑TTTTCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTTCAATGACGCAACATTTGCAGGAAATCAGCTAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAg                                                                                                                                                                        <  1:449519/275‑1 (MQ=255)                                                                               agatagtttgtttacttcaagagtgacggaaacgtacttgtctttattagcgcatggcgcgaaagcgaccgtggcaaaatattccgtgaagtaaaaaagcaatgccgccatcggcggcattcacacgcttagttcatgccgagacgaatcaggtccagtggtgccagtttctcttcacaaccttcaacaactacggTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACa                                                                                                                                                                         >  1:323681‑M1/197‑275 (MQ=255)                                                                                            actgcaagagtgacggaaacgtacttgtctttattagcgcatggcgcgaaagcgaccgtggcaaaatattccgtgaagtaaaaaagcaatgccgccatcggcggcattcacacgcttagttcatgccgagacgaatcaggtccagtggtgccagtttctcttcacaaccttcaacaactacggTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGAAGTGAGCGGGAGAAAAAACAAAAAATATTTCAATCAACAGGAGAATttaa                                                                                                                                                              <  2:323675‑M1/90‑2 (MQ=255)                                                                                                      cATCTTGATATTTTTCTCTGCCCTGCAAAAACGTGATGGCGAGGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATTCATc                                                                                                                                                                                                                        >  1:4151/1‑205 (MQ=255)                                                                                                        tCTTGATA‑TTTTCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGAAGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTNTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACg                                                                                                                                               <  1:618322/275‑1 (MQ=255)                                                                                                                   ttCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCttt                                                                                                                                                                                                                                                     >  2:437858/1‑163 (MQ=255)                                                                                                                       ctGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTccc                                                                                                                                                                                                                                                 <  1:437865/163‑1 (MQ=255)                                                                                                                                    aCGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTTCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCCTGCATGCATCAAAAAAGATGTGAGCTTGCTCAAAAACAAAAAATATTTCACCCGACACGAGTATTTATCTTCCCCCCTTTACTCTGGCTTCGCCTGtcacncccaaacag                                                                                                                    >  2:271815/1‑262 (MQ=255)                                                                                                                                       tGATGGCGATGCGGTAGAACTTGCAATGACGCAACATTGGCAGGAAAACAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGNTTAGCGAAGAGTAATTCATGTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGGGCGTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGaa                                                                                                                 <  1:554861/275‑1 (MQ=255)                                                                                                                                                  cGGTAGAACGTGCAATGACGAAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGANTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATga                                                                                                      <  1:554971/275‑1 (MQ=255)                                                                                                                                                            tGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAgg                                                                                                                     >  2:198285/1‑250 (MQ=255)                                                                                                                                                                aTGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGaa                                                                                                                 <  1:198288/250‑1 (MQ=255)                                                                                                                                                                                   aaaTCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGc                                                                                                                                                                                                                                             >  1:532522/1‑107 (MQ=255)                                                                                                                                                                                       cAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTa                                                                                                                                                                                                                                         <  2:532514/107‑1 (MQ=255)                                                                                                                                                                                            agggacagcgcCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCTAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAACAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTTCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACTTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGcc                                                            <  1:678213/268‑1 (MQ=255)                                                                                                                                                                                                                         agtggcTGGTTTAGCTAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTcaca                                 <  2:691013/268‑1 (MQ=255)                                                                                                                                                                                                                         aGCGTCTTGTTTAGCGAATAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGTGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCacac                                <  1:268941/274‑1 (MQ=255)                                                                                                                                                                                                                                           gagTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGa                                                                                                                                                                           >  2:624257/1‑117 (MQ=255)                                                                                                                                                                                                                                               aaTTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAgg                                                                                                                                                                       <  1:624266/117‑1 (MQ=255)                                                                                                                                                                                                                                                aTTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATAGCTCATGCATACATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTgcg                                                                                                                                                        <  2:154536/131‑1 (MQ=255)                                                                                                                                                                                                                                                      ttCCTCTCATACCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGTGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCCAGATCCTGTCGATTGATACTGAAgg  >  1:698681/1‑275 (MQ=255)                                                                                                                                                                                                                                                        ccTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCt                                                                                                                                         >  2:708985/1‑138 (MQ=255)                                                                                                                                                                                                                                                        ccTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAgg                                                                                                                     >  2:467051/1‑158 (MQ=255)                                                                                                                                                                                                                                                         ctcttcacaaccttcaacaactacggTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGa                                                                                                                                                                           <  2:369496‑M1/77‑1 (MQ=255)                                                                                                                                                                                                                                                            tcATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGa                                                                                                                                     <  1:708995/138‑1 (MQ=255)                                                                                                                                                                                                                                                            tcATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGCTACGTGGACTTCGACTGTAAATCAGAAAGGAGaa                                                                                                                 <  1:467058/158‑1 (MQ=255)                                                                                                                                                                                                                                                             tcacaaccttcaacaactacggTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAgg                                                                                                                                                                       >  1:369502‑M1/23‑103 (MQ=255)                                                                                                                                                                                                                                                                    tccGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACt                               >  1:82285/1‑232 (MQ=255)                                                                                                                                                                                                                                                                        gggTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGa                                                                                                                                                                           >  2:90566/1‑88 (MQ=255)                                                                                                                                                                                                                                                                        gggTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCa                           <  2:82284/232‑1 (MQ=255)                                                                                                                                                                                                                                                                            gagaGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAgg                                                                                                                                                                       <  1:90567/88‑1 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                      AACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATA‑TTTTCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGAGTCTTTTCCCCCGCCTTATGGCTCATGCATGCATCAAAAAAGATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGG  >  CP009273/1623057‑1623575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.