New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1623330 =	28 (0.730)	4 (0.110)	4/306	NT	15.6%	intergenic (+35/‑142)	rspR/ydfZ	transcriptional repressor for rspAB/selenoprotein, function unknown
	?	CP009273	1623608 =	16 (0.430)					coding (137/204 nt)	ydfZ	selenoprotein, function unknown

GATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGTAAACAAACTATTGTCTGGCAAATCATCACCAAAGATCGCCTTAATCGCCAGCAATGACTGGACGCGCGCTTTCCCTTCGGCACTACTTTGTA  >  CP009273/1623368‑1623882                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                   gATTTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGc                                                                                                                                                                                                                                                   <  1:271820/274‑1 (MQ=255)                                                     atTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTATGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGAGTGTGAATGCCGCAGAt                                                                                                                                                                                              >  1:51161/1‑275 (MQ=255)                                                                      ggCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGGGAATGCCGCAGATGGCGGCATTGCtgtttt                                                                                                                                                                             >  1:184861/1‑275 (MQ=255)                                                                                                               acCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTGTCGCGcccgc                                                                                                                                     >  2:94634/1‑271 (MQ=255)                                                                                                                    cGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAAc                                                                                                                                                                                                                                                       >  2:520232/1‑155 (MQ=255)                                                                                                                        cgtaaccgtaacGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGACACTGGc                                                                                                                                                                                                                                                   <  1:520239/155‑1 (MQ=255)                                                                                                                          taaccgtaacGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATg                                                                                                                                                                                                      >  2:339760/1‑198 (MQ=255)                                                                                                                            accgtaacGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCAGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCATCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATCCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAAAAAAGACa                                                                                                                       >  1:689749/1‑275 (MQ=255)                                                                                                                              cgtaacGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATgccgc                                                                                                                                                                                                  <  1:339766/198‑1 (MQ=255)                                                                                                                                                       ttaaattctcctgttgattgaaatattttttgttttttctcccgctcacttcttttttgatgcatgcatgagccataaggcgggggaaaaCCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGt                                                                                              <  2:323675‑M2/183‑1 (MQ=255)                                                                                                                                                                cctgtcgagtgaaatattttttgtttttgatcaagctcacatcttttttgatgcatgcatgagccataaggcgggggaaaaCCGTAGTTGTTGAAGGTTGTGa                                                                                                                                                                                                                                                               >  1:369502‑M2/82‑103 (MQ=255)                                                                                                                                                                 tAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAACCTGGCACCACTGGACCTGAtt                                                                                                                                                                                                                                   >  2:574067/1‑130 (MQ=255)                                                                                                                                                                 tAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGTAAACAAACTAt                                                                                   <  1:94635/274‑1 (MQ=255)                                                                                                                                                                  tgtcgagtgaaatattttttgtttttgatcaagctcacatcttttttgatgcatgcatgagccataaggcgggggaaaaCCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGAAGTAAACAAACtatct                                                                                 >  1:323681‑M2/80‑273 (MQ=255)                                                                                                                                                                  aGCGGCGCCGGTCACCCTGGCAAGAACCTGTCGGTTGATACGGAAGGTCTGAAAGCTGAGCAAATCCGGCGCGGAAAAAGCGTAGGGGTTGAAGGTAGTGAAGAGAAACTAGGACCACTGGACCGGGTGCGTCTCGGCATGAACTAAGCGGTTGAATACCGACGATGGAGGCATGGCGTGATTAGTACAGGGAATATTTTGAGACGGTAGCTTTCGAGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTGTTGCAGTAAAAAAATTATTg                                                                                 >  2:285441/1‑275 (MQ=255)                                                                                                                                                                    tcgagtgaaatattttttgtttttgatcaagctcacatcttttttgatgcatgcatgagccataaggcgggggaaaaCCGTAGTTGTTGAAGGTTGTGAagag                                                                                                                                                                                                                                                           <  2:369496‑M2/26‑1 (MQ=255)                                                                                                                                                                     ggCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGtc                                                                                                                                                                                                                               <  1:574076/130‑1 (MQ=255)                                                                                                                                                                                                             aaGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGtctc                                                                                                                                                                                                                             >  2:357308/1‑92 (MQ=255)                                                                                                                                                                                                                 tCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCa                                                                                                                                                                                                                         <  1:357314/92‑1 (MQ=255)                                                                                                                                                                                                                                 aTCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGTAAACAAACTATTGTCTGGCAAATCATCACCAAAGATCGCCTTAATCGCCAGCAATGACTGGACGCGCGCTTTCCCt                  >  1:168445/1‑275 (MQ=255)                                                                                                                                                                                                                                            taaatCCGTAGTTGTTGAAGGTTGTGAAGGGAAACTGGCACCCCTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGTAAACAAACTATTGTCTGGCAAATCATCACCAAAGATCGCCTTAATCGCCAGCAATGACTGGACGCGCGCTTTCCCTTCGGCactact       <  2:168442‑M2/270‑1 (MQ=255)                                                                                                                                                                                                                                                aCCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGTAAACAAACTATTGTCTGGCAAATCATCACCAAAGATCGCCTTAATCGCCAGCAATGACTGGACGCGCGCTTTCCCTTCGGCACTACTTTGt   <  1:336924‑M2/274‑1 (MQ=255)                                                                                                                                                                                                                                                 ccGTTGTTGTTGAAGTTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACCTCACGGAATATTTTGNCACGGTCGCTTTAGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGTAAACAAACTATTGTCTGGCAAATCATCACCAAAGATCGCCTTAATCGCCAGCAATGACTGGACGCGCGCTTTCCCTTCGGCACTACTTTGTa  <  1:613212/275‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                   GATGTGAGCTTGATCAAAAACAAAAAATATTTCACTCGACAGGAGTATTTATATTGCGCCCGTTACGTGGGCTTCGACTGTAAATCAGAAAGGAGAAAACACCTATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAAGCGTGTGAATGCCGCCGATGGCGGCATTGCTTTTTTACTTCACGGAATATTTTGCCACGGTCGCTTTCGCGCCATGCGCTAATAAAGACAAGTACGTTTCCGTCACTCTTGCAGTAAACAAACTATTGTCTGGCAAATCATCACCAAAGATCGCCTTAATCGCCAGCAATGACTGGACGCGCGCTTTCCCTTCGGCACTACTTTGTA  >  CP009273/1623368‑1623882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.