New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1726230	24 (0.620)	7 (0.190)	6/294	NT	26.7%	coding (2887/4617 nt)	lhr	putative ATP‑dependent helicase
	?	CP009273	= 1726315	16 (0.440)					coding (2972/4617 nt)	lhr	putative ATP‑dependent helicase

GCTGGCAGAGCGCCGGGCATCCGTACTGTCGCTGGACAGCGAGTTACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGCTCTGGTCACGGCTGAACAACTGGCTCATGAGTTTAGTCTCGGTATTGCCATTGT  >  CP009273/1725998‑1726504                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                   gCTGGCAGAGCGCCGGGCATCCGTACTGTCGCTGGACAGCGAGTTACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAANTACTCGACNCGCAGGTCATTCTCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgtttt                                                                                                                                                                                                                                          <  1:473547‑M1/275‑43 (MQ=255)                        tACTGTCGCTGGACAGCGAGTTACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCgat                                                                                                                                                                                                                    <  1:309502/274‑1 (MQ=255)                                             tACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACACGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGAATGTTCTACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTt                                                                                                                                                                                              >  1:633692‑M2/1‑274 (MQ=255)                                                    cAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGACGCAACGGCATACAGGCAGNAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAACGTCTtgcctgta                                                                                                                                                                                       <  1:544230‑M2/275‑9 (MQ=255)                                                       tCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGTCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGGGGt                                                                                                                                                                                                                                                                       >  1:2102/1‑192 (MQ=255)                                                                 cAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCa                                                                                                                                                                                                                                           >  1:43444/1‑210 (MQ=255)                                                                   ggTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCNACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCACAGCGATGATTAGCGGAAAGGAGCGTCTTGACAGTATGGATGATGCCGCCa                                                                                                                                                                        >  1:610100/1‑275 (MQ=255)                                                                     tCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTaa                                                                                                                                                                                                                                       <  2:43444/210‑1 (MQ=255)                                                                                           cccGCAAGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTTAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCCGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTGTGGAGGATGCACCCAGGCTGCGGGGTGCCATCGGctgac                                                                                                                                                >  2:653537/1‑271 (MQ=255)                                                                                                   tCATTCTCCAGGTGGAAGAGGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCa                                                                                                                                        <  1:440338/275‑1 (MQ=255)                                                                                                                 gaagaaGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGa                                                                                                                                                                                                          >  2:311111/1‑195 (MQ=255)                                                                                                                     aagaGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAgg                                                                                                                                                                                                      <  1:311117/195‑1 (MQ=255)                                                                                                                        agTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaac                                                                                                                                                                                                          >  1:432139‑M1/1‑114 (MQ=255)                                                                                                                         gTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGTGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTaaaa                                                                                                                                                                                                                                     >  1:451692/1‑160 (MQ=255)                                                                                                                            gCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaacctct                                                                                                                                                                                                      <  2:432132‑M1/188‑79 (MQ=255)                                                                                                                             cAACGACTGGCGCGTGGCAGAATAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAATATGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGaa                                                                                                                                                                                                                                 <  2:451685/160‑1 (MQ=255)                                                                                                                                           tGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCa                                                                                                                                                                                                                                           >  1:626731/1‑136 (MQ=255)                                                                                                                                            ggCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGc                                                                                                                                                                  >  1:651927/1‑208 (MQ=255)                                                                                                                                               agaagaGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTaa                                                                                                                                                                                                                                       <  2:626722/136‑1 (MQ=255)                                                                                                                                                gaagaGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGa                                                                                                                                                              <  2:651918/208‑1 (MQ=255)                                                                                                                                                 aagaGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGATTCATTTACTCGCtt                                                                                           >  1:54170/1‑274 (MQ=255)                                                                                                                                                      cGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGaa                                                                                                                                                                                                                                                                            >  1:668044/1‑92 (MQ=255)                                                                                                                                                        aaaGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaa                                                                                                                                                                                                           >  2:234390‑M1/1‑82 (MQ=255)                                                                                                                                                          aGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAgg                                                                                                                                                                                                                                                                        <  2:668035/92‑1 (MQ=255)                                                                                                                                                            gTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaacctc                                                                                                                                                                                                       <  1:234395‑M1/155‑78 (MQ=255)                                                                                                                                                                 aaagGATTGTTCGAACTGCTGCTCGAACTGGTGCCACTTACCGTTTTATACCTTGCGCAACGGCATACAGGCAGCAGTGAACAGGTTGCGTCGTATCTGGAAAATCTTCTTGCTGTAAAACGAATCTTCCCTGCGATGATTAGCGGACAGGATCGTCTTGCCTGTATGGATGGTGCCGCCTGGGTGCGTGTTCACCTCGGTATACAACTACCAGGGTCATTGCCAGGGATTTATTTACATAGAGTCATTTCCCCGCATCGCGACCTCTTTCTgcg                                                                          <  2:610091/274‑1 (MQ=255)                                                                                                                                                                      aTTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGTGCGTCTTGCCTGTATgg                                                                                                                                                                                    >  1:655640/1‑164 (MQ=255)                                                                                                                                                                      aTTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCAtt                                                                                                                                >  1:419204/1‑216 (MQ=255)                                                                                                                                                                          ttCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGgatga                                                                                                                                                                                <  2:655631/164‑1 (MQ=255)                                                                                                                                                                                    tgcGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGc                                                        >  2:701761/1‑274 (MQ=255)                                                                                                                                                                                     gcgcGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGNTGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGct                                                       <  1:653546/274‑1 (MQ=255)                                                                                                                                                                                                                      ggCGCAACGGCATACAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaa                                                                                                                                                                                                           >  1:268228‑M1/1‑20 (MQ=255)                                                                                                                                                                                                                          cAACGGCATACAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaacctc                                                                                                                                                                                                       <  2:268223‑M1/93‑78 (MQ=255)                                                                                                                                                                                                                            aCGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgc                                                                                                                                                                                            <  2:585707‑M2/102‑4 (MQ=255)                                                                                                                                                                                                                                cATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgt                                                                                                                                                                                        >  1:585716‑M2/1‑95 (MQ=255)                                                                                                                                                                                                                                  tACAGGCAagacgttcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaacctcttcactnctgcctgtatgccgttgcgtcaggtcttcaacggtcattggccccagttcgcgcagcaggtcgaacaatccttcttcacctttcgctcttctgccaggagccagtcgttgcaactcttcttccacctggcgaatgacctgcgggtcgagtaattcccccggatcgacctgtccgagtagattg         <  1:544230‑M1/275‑268 (MQ=255)                                                                                                                                                                                                                                   aCAGGCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaacctcttcactgctgcctgtatg                                                                                                                                                                                     >  1:585716‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                       gCAagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaacctcttcactgctgcctgtatgccgt                                                                                                                                                                                 <  2:585707‑M1/102‑100 (MQ=255)                                                                                                                                                                                                                                         aagacgctcctgtccgctaatcatcgctgggaagattcgttttactgcaagaagattttccagatacgacgcaacctcttcactgctgcctgtatgccgttgcgccaggtcttcaacggtcattggccccagttcgcgcagcaggtagaacattccttcttcacctttcgctcttctgccaggagccagtcgttgcaactcttcttccacctggcgaatgacctgcgtgtcgagtaattcccccggatcgacctgtccgagtagattgcgcagta  >  1:633692‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                   GCTGGCAGAGCGCCGGGCATCCGTACTGTCGCTGGACAGCGAGTTACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGCTCTGGTCACGGCTGAACAACTGGCTCATGAGTTTAGTCTCGGTATTGCCATTGT  >  CP009273/1725998‑1726504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.