New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1726230	24 (0.620)	7 (0.190)	6/294	NT	26.7%	coding (2887/4617 nt)	lhr	putative ATP‑dependent helicase
	?	CP009273	= 1726315	16 (0.440)					coding (2972/4617 nt)	lhr	putative ATP‑dependent helicase

TACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGCTCTGGTCACGGCTGAACAACTGGCTCATGAGTTTAGTCTCGGTATTGCCATTGTCGAAGAGCAGCTTCAGCAACTGCGTGAACAGGGTCTGGTGATGAATCTGCAACA  >  CP009273/1726042‑1726558                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                    tACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACACGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGAATGTTCTACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTt                                                                                                                                                                                                                                                    >  1:633692‑M2/1‑274 (MQ=255)        cAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGACGCAACGGCATACAGGCAGNAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAACGTCTtgcctgta                                                                                                                                                                                                                                             <  1:544230‑M2/275‑9 (MQ=255)                       ggTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCNACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCACAGCGATGATTAGCGGAAAGGAGCGTCTTGACAGTATGGATGATGCCGCCa                                                                                                                                                                                                                              >  1:610100/1‑275 (MQ=255)                                               cccGCAAGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTTAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCCGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTGTGGAGGATGCACCCAGGCTGCGGGGTGCCATCGGctgac                                                                                                                                                                                                      >  2:653537/1‑271 (MQ=255)                                                       tCATTCTCCAGGTGGAAGAGGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCa                                                                                                                                                                                              <  1:440338/275‑1 (MQ=255)                                                                                                ggCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGc                                                                                                                                                                                                                        >  1:651927/1‑208 (MQ=255)                                                                                                    gaagaGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGa                                                                                                                                                                                                                    <  2:651918/208‑1 (MQ=255)                                                                                                     aagaGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGATTCATTTACTCGCtt                                                                                                                                                 >  1:54170/1‑274 (MQ=255)                                                                                                                     aaagGATTGTTCGAACTGCTGCTCGAACTGGTGCCACTTACCGTTTTATACCTTGCGCAACGGCATACAGGCAGCAGTGAACAGGTTGCGTCGTATCTGGAAAATCTTCTTGCTGTAAAACGAATCTTCCCTGCGATGATTAGCGGACAGGATCGTCTTGCCTGTATGGATGGTGCCGCCTGGGTGCGTGTTCACCTCGGTATACAACTACCAGGGTCATTGCCAGGGATTTATTTACATAGAGTCATTTCCCCGCATCGCGACCTCTTTCTgcg                                                                                                                                <  2:610091/274‑1 (MQ=255)                                                                                                                          aTTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGTGCGTCTTGCCTGTATgg                                                                                                                                                                                                                                          >  1:655640/1‑164 (MQ=255)                                                                                                                          aTTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCAtt                                                                                                                                                                                      >  1:419204/1‑216 (MQ=255)                                                                                                                              ttCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGgatga                                                                                                                                                                                                                                      <  2:655631/164‑1 (MQ=255)                                                                                                                                        tgcGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGc                                                                                                              >  2:701761/1‑274 (MQ=255)                                                                                                                                         gcgcGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGNTGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGct                                                                                                             <  1:653546/274‑1 (MQ=255)                                                                                                                                                                                aCGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgc                                                                                                                                                                                                                                                  <  2:585707‑M2/102‑4 (MQ=255)                                                                                                                                                                                    cATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgt                                                                                                                                                                                                                                              >  1:585716‑M2/1‑95 (MQ=255)                                                                                                                                                                                              gcagTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCAGCCAGGCTGCGTGATg                                                                                                                                                                                                                  >  2:458075/1‑120 (MQ=255)                                                                                                                                                                                                  tGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCt                                                                                                                                                                                                              <  1:458082/120‑1 (MQ=255)                                                                                                                                                                                                     agagGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgtatgccgttgcgccaggtcttcaacggtcattggccccagttcgcgcagcaggtcgaacaatccttcttcacctttcgctcttctgccaggagccagtcgttgc                                                                                                                                       <  2:432132‑M2/188‑111 (MQ=255)                                                                                                                                                                                                      gagGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgtatgccgttgcgccaggtcttcaacggtcattggccccagttcgcgcagcaggtcgaacaatccttcttcac                                                                                                                                                                       <  1:234395‑M2/155‑79 (MQ=255)                                                                                                                                                                                                      gagGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgtatgccgttg                                                                                                                                                                                                                                     <  2:268223‑M2/93‑17 (MQ=255)                                                                                                                                                                                                         gTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgtatgccgttgcgccaggtcttcaacggtcattggccccagttcgcgcagcaggtcgaacaatccttcttcacctttcgctcttctgccaggagccagtcgttgcaact                                                                                                                                   >  1:432139‑M2/1‑74 (MQ=255)                                                                                                                                                                                                          ttGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgtatgccgttgcgccaggtcttcaacggtcattggccccagttcgcgcagcaggtcgaacaatccttcttcaccttt                                                                                                                                                                   >  2:234390‑M2/1‑73 (MQ=255)                                                                                                                                                                                                          ttGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgtatgccgttgcgcc                                                                                                                                                                                                                                 >  1:268228‑M2/1‑73 (MQ=255)                                                                                                                                                                                                            gCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACCAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTNTGCGCTATNTCCGGGCTCATGATCTGGTCACGGCTGAACAACTGGCTCATGAGTTTAGTCTCGGTATTGCCATTGTCGAAGAGCAACTTc                                          >  1:483236/1‑274 (MQ=255)                                                                                                                                                                                                                                         aaaaCGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTtgcctgtatgccgttgcgccaggtcttcaacggtcattggccccagttcgcgcagcaggtcgaacaatccttcttcacctttcgctcttctgccaggagccagtcgttgcaactcttcttccacctggagaatgacctgcgngtcgagtanttcccccggatcgacctgtccgagtagattgcgcagtaactcgctgtccagcgacagtacggatgcccggcgctctgccagc            <  1:473547‑M2/275‑234 (MQ=255)                                                                                                                                                                                                                                                    tCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGCTCTGGTCACGGCTGAACAACTGGCTCATGAGTTTAGTCTCGGTATTGCCATTGTCGAAGAGCAGCTTCAGCAACTGCGTGAACAGGGTCTGGTGATGAATCTGcaaca  <  1:701770/274‑1 (MQ=255)                                                                                                                                                                                                                                                                         aGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCa                                                                                                                 >  1:73700/1‑142 (MQ=255)                                                                                                                                                                                                                                                                             gCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGct                                                                                                             <  2:73699/142‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                    TACTGCGCAATCTACTCGGACAGGTCGATCCGGGGGAATTACTCGACCCGCAGGTCATTCGCCAGGTGGAAGAAGAGTTGCAACGACTGGCTCCTGGCAGAAGAGCGAAAGGTGAAGAAGGATTGTTCGACCTGCTGCGCGAACTGGGGCCAATGACCGTTGAAGACCTGGCGCAACGGCATACAGGCAGCAGTGAAGAGGTTGCGTCGTATCTGGAAAATCTTCTTGCAGTAAAACGAATCTTCCCAGCGATGATTAGCGGACAGGAGCGTCTTGCCTGTATGGATGATGCCGCCAGGCTGCGTGATGCCCTCGGCGTACGACTACCAGAGTCATTGCCAGAGATTTATTTACATAGAGTCAGTTACCCGCTTCGCGACCTCTTTCTGCGCTATCTCCGGGCTCATGCTCTGGTCACGGCTGAACAACTGGCTCATGAGTTTAGTCTCGGTATTGCCATTGTCGAAGAGCAGCTTCAGCAACTGCGTGAACAGGGTCTGGTGATGAATCTGCAACA  >  CP009273/1726042‑1726558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.