New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1769591	16 (0.420)	4 (0.110)	4/302	NT	25.5%	coding (649/759 nt)	aroD	3‑dehydroquinate dehydratase
	?	CP009273	= 1769689	8 (0.220)					coding (747/759 nt)	aroD	3‑dehydroquinate dehydratase

CCGTCGCCTACGCCCACGCGCATGATGTGAAAGTAGTCATGTCCAACCATGACTTCCATAAAACGCCGGAAGCCGAAGAAATCATTGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATT  >  CP009273/1769322‑1769839                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                         ccGTCGCCTACGCCCACGCGCATGATGTGAAAGTAGTCATGTCCAACCATGACTTCCATAAAACGCCGGAAGCCGAAGAAATCATTGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGATGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTa                                                                                                                                                                                                                                                     >  1:453956/1‑275 (MQ=255)                                                                cGCCGGAAGCCGAAGAAATCATTGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTNCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGtaaaatagttaataccgtgcgcaaatcatttaccgagatttgccctggcgcagacgcttttttta                                                                                                                                                                                         >  1:605227‑M1/1‑207 (MQ=255)                                                                cGCCGGAAGCCGAAGAAATCATTGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCCGGCTGGTGAAGTATTTGGCTCGGCGGCAAATTTTGGTGCGGTAACAACAGCGTCTGCGCGAGGGCaaccttgcgca                                                                                                                                                                                      >  2:84827/1‑266 (MQ=255)                                                                cGCCGGAAGCCGAAGAAATCATTGCCCGTCTGCACAAAATCCAATCCTTCCACGCTGACATTCCTAAGATTGCGCTGATGCTGCACAGTACCAGCCACGTGTTGACGTTTCTTGCTGCGACCCTGGAGATGCTGGCGCAGTATGCGGATCGTCGAATTATCACGATGTAGAGGGCAAAAACTGGCGAAAATTCTCGTCTGGCTTGTGAAGTACTGGGCCCGACGGCAACGGTGGGTTCGGTCAAGAATGCGCGAGAGCACGGGCAAGTCTCGGTa                                                                                                                                                                                      >  2:8917/1‑275 (MQ=255)                                                                      aaGCCGAAGAAATCATTGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCTATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCAGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTc                                                                                                                                                                                                            <  1:423332/247‑1 (MQ=255)                                                                                gagatttGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGc                                                                                                                                                                                                                           >  2:303755/6‑222 (MQ=255)                                                                                 aaaattgCCCGTATGCGCAAAATCCAATCCTTCGCCGCCGTTATTCGTAAGATTGCGCTGATGCCGCAAAGTACCAGGGAGGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATGATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGtaaaatagttaataccgtgcgcaaatcatttaccgagatttgccctggcgcagacgctttttttaccgcaccaaaagttgccgcc                                                                                                                                                                     <  2:605218‑M1/272‑86 (MQ=255)                                                                                    tttGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTa                                                                                                                                                                                                                       <  1:303761/221‑1 (MQ=255)                                                                                            tCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTc                                                                                                                                                                                                            <  1:110735/225‑1 (MQ=255)                                                                                            tCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTc                                                                                                                                                                                                            >  2:110734/1‑225 (MQ=255)                                                                                                            tCCTTCGACGCCGATAGTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGNAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACTGTATCAACTATTCTACACCAGGCATAAg                                                                                                                                           <  1:506475/274‑1 (MQ=255)                                                                                                                                                                             gcttgcCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACttt                                                                                                                                                                                                                                 >  2:76728/1‑123 (MQ=255)                                                                                                                                                                                 gcCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGt                                                                                                                                                                                                                             <  1:76729/123‑1 (MQ=255)                                                                                                                                                                                    gcgACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGtaaaatagttaataccgtgcgcaaatcatttaccgagatttgccctggcgcagacgctttttt                                                                                                                                                                                           >  1:402727‑M1/1‑91 (MQ=255)                                                                                                                                                                                        cccTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGtaaaatagttaataccgtgcgcaaatcatttaccgagatttgccctggcgcagacgctttttttacc                                                                                                                                                                                       <  2:402720‑M1/154‑68 (MQ=255)                                                                                                                                                                                                       aGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGAttt                                                                                                                                                                              >  1:169629/1‑148 (MQ=255)                                                                                                                                                                                                           gTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTgcgc                                                                                                                                                                          <  2:169626/148‑1 (MQ=255)                                                                                                                                                                                                                ccGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTg                                                                                                                                                                             >  2:449576/1‑140 (MQ=255)                                                                                                                                                                                                                    tCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCa                                                                                                                                                                         <  1:449583/140‑1 (MQ=255)                                                                                                                                                                                                                      gTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCCGGTGAAGTATTTGGCTCGGCGTCAACTTTTGGTGCGGGAAAAAAAGCGTCTGAGCCAGGGCAAATCTCGGTAAATGAttgg                                                                                                                                                                             >  1:258383/1‑132 (MQ=255)                                                                                                                                                                                                                                                    cTGGCGTGATTTCTCGTCTTGTTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGAACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt  <  1:84828/275‑1 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                         CCGTCGCCTACGCCCACGCGCATGATGTGAAAGTAGTCATGTCCAACCATGACTTCCATAAAACGCCGGAAGCCGAAGAAATCATTGCCCGTCTGCGCAAAATGCAATCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATT  >  CP009273/1769322‑1769839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.