New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1769591	16 (0.420)	4 (0.110)	4/302	NT	25.5%	coding (649/759 nt)	aroD	3‑dehydroquinate dehydratase
	?	CP009273	= 1769689	8 (0.220)					coding (747/759 nt)	aroD	3‑dehydroquinate dehydratase

TCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGCGGTGAATTATATTCCCGACGAAGCAACA  >  CP009273/1769429‑1769933                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     tCCTTCGACGCCGATAGTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGNAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACTGTATCAACTATTCTACACCAGGCATAAg                                                                                                                                                                                                                                         <  1:506475/274‑1 (MQ=255)                                                                                                                                         cTGGCGTGATTTCTCGTCTTGTTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGAACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt                                                                                                <  1:84828/275‑1 (MQ=255)                                                                                                                                                                                 ggcggcAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTAcaccagccagacgagaaattacgccagtttttgccatcgacatcgtgatcattggacgatcggcatactgctcctgcatctccagggtcgcggcaagcaacgtcagcacctccctggtactttgcggcatcagcgcaatcttacgaataacggcggcgaaggattggattttgcgcatacgggcaatttt                                                        <  2:605218‑M2/275‑191 (MQ=255)                                                                                                                                                                                 ggcggcAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCAAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAACTAACATCAGAAACAGGAATTAACAATGAAAACTGTAAAAACACATCGTATaaaatgaaac                                                        >  2:98106/1‑268 (MQ=255)                                                                                                                                                                                                tGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATAGACAAGTGCAGGTCCTGTCg                                         >  1:302176/1‑275 (MQ=255)                                                                                                                                                                                                   ggTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTAcaccagccagacgagaaattacgccagtttttgccatcgacatcgtgataattggacgatcggcatactgctcctgcatctccaggg                                                                                                                                                               <  2:402720‑M2/154‑88 (MQ=255)                                                                                                                                                                                                    gTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGa                                                                                                                       >  1:678361/1‑193 (MQ=255)                                                                                                                                                                                                     tAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTAcaccagccagacgagaaattacgccagtttttgccatcgacatcgtgataattgnacgatcggcatactgctcctgcatctccagggtcgcggcaagcaacgtcagcacatcgctggtactttgcggcatcagcgcaatcttaggaatatcggcgtcgaaggattgcattttgcgcagacgggcaatgatttcttcggcttccggcg                                       >  1:605227‑M2/1‑65 (MQ=255)                                                                                                                                                                                                       aaaaaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTAcaccagccagacgagaaattacgccagtttttgccatcgacatcgtgataattggacgatcggcatactgctcctgcatctccagggtcgc                                                                                                                                                           >  1:402727‑M2/1‑63 (MQ=255)                                                                                                                                                                                                        aaaaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAAt                                                                                                                   <  2:678352/193‑1 (MQ=255)                                                                                                                                                                                                            aGCGTCTGCGCCAGGGCAATTTTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGCg                             <  1:98107/275‑1 (MQ=255)                                                                                                                                                                                                                                         aTGAATCGCGCACGGTATTCACTATTTTTCACCCAGCATAATCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGCGGTGAATTATATTCCCGACGAAGCAaca  <  2:302170/273‑1 (MQ=255)                                                                                                                                                                                                                                                                  tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAata                                                                                                                                                                                           >  1:360412/1‑63 (MQ=255)                                                                                                                                                                                                                                                                  tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTa                                                                                                                                            >  2:371096/1‑110 (MQ=255)                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     TCCTTCGACGCCGATATTCCTAAGATTGCGCTGATGCCGCAAAGTACCAGCGATGTGCTGACGTTGCTTGCCGCGACCCTGGAGATGCAGGAGCAGTATGCCGATCGTCCAATTATCACGATGTCGATGGCAAAAACTGGCGTAATTTCTCGTCTGGCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGCGGTGAATTATATTCCCGACGAAGCAACA  >  CP009273/1769429‑1769933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.