New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1775174	16 (0.420)	6 (0.160)	5/308	NT	26.8%	coding (517/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit
	?	CP009273	= 1775370	17 (0.450)					coding (713/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit

GGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTG  >  CP009273/1774912‑1775407                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                          ggCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATCACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGt                                                                                                                                                                                                                                         >  1:367631/1‑265 (MQ=255) ggCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCACGCTGGCGATCATTACCCTNGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAAtt                                                                                                                                                                                                                                >  1:560932/1‑274 (MQ=255)     gcggagaAAANTAGTAAAGCGCGGGCAGCCCGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGTGGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGAGGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTctct                                                                                                                                                                                                                            <  2:72219/269‑1 (MQ=255)                                                                 gTGAAAGATGCCCCGGAGGTGGTTATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAAATCAACCGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTgg                                                                                                                                                                <  2:579317/274‑1 (MQ=255)                                                                         tGCCACGGCGGTGGATATTCTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCgtc                                                                                                                                                        >  1:579326/1‑274 (MQ=255)                                                                                                    tCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTTCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTNTGTTTCTCCGCTTCATGACATTCTTTGTCTCGAACGCCGTTCTCAAGCCg                                                                                                                                                                                                    >  1:611095/1‑203 (MQ=255)                                                                                                                                                                                                           tggcacgcctgttaTACCTCGTCTCAGTGCCCGACAGGAACGGTACCTTATGTTGCTGCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCgg                     <  1:409611/262‑1 (MQ=255)                                                                                                                                                                                                             gTGCACCAGTGATACCTCTCATCTGTGCCCGACATAAACGGTACCTTATGTTGCTCCGCtccatctagttctcgccttcggcaattggacgtgaacagccgacttcagcattcatcaccgccgccagttcgtggaccatttttaggtcatcctgcgccgccagtccacgagcgacgccaaccanccgt                                                                                                          >  1:481033‑M1/1‑59 (MQ=255)                                                                                                                                                                                                             gTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCCGGATGACCTACAAATCGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGa                                                         >  1:379736/1‑237 (MQ=255)                                                                                                                                                                                                             gTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTACACGAACTGGCGGCGGGGATGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGAGAGAACTGGATGGAGCGTGAACGTTATATTgggg                   >  1:45063/1‑273 (MQ=255)                                                                                                                                                                                                             gTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCGCTGTCGCGAACGCCGTGCGAAAACCGCAagc                                                                                                                                                                                               >  2:219206/1‑103 (MQ=255)                                                                                                                                                                                                             gTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTT‑‑‑‑‑GCtccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcgtggaccatttttaggtcatcctgcgc                                                                                                                                         >  2:371936‑M1/1‑54 (MQ=255)                                                                                                                                                                                                                 accacagatacctCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCtccatccagttctcgccttcggcaattggacgtaaacagccgacttcagcattcagcaccgccgccagttcgtggaccatttttaggtcatcctgcgccgccagtccacgaccgacgccaaccacacgttttg                                                                                                      <  2:481026‑M1/182‑134 (MQ=255)                                                                                                                                                                                                                 aCCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCTTGCGAAAGCCGCAAGCAGCg                                                                                                                                                                                           <  1:219211/103‑1 (MQ=255)                                                                                                                                                                                                                 aCCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTT‑‑‑‑‑GCtccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcgtggaccatttttaggtcatcctgcgccgcc                                                                                                                                     <  1:371942‑M1/152‑103 (MQ=255)                                                                                                                                                                                                                   cAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACgtg                                                                                                                                                                   >  2:156886/1‑125 (MQ=255)                                                                                                                                                                                                                       gATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGt                                                                                                                                                               <  1:156889/125‑1 (MQ=255)                                                                                                                                                                                                                        aTACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCtccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcg                                                                                                                                                                   >  2:398557‑M1/1‑48 (MQ=255)                                                                                                                                                                                                                        aTACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCa                                                                                                                                                                                                                                       >  2:368287/1‑52 (MQ=255)                                                                                                                                                                                                                         tACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCcgcg                                                                                                                                                                                                                                          <  2:568393/48‑1 (MQ=255)                                                                                                                                                                                                                         tACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCcgcg                                                                                                                                                                                                                                          <  2:569894/48‑1 (MQ=255)                                                                                                                                                                                                                            ctctCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCtccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcgtgga                                                                                                                                                               <  1:398564‑M1/120‑77 (MQ=255)                                                                                                                                                                                                                            ctctCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGaa                                                                                                                                                                                                                                   <  1:368293/52‑1 (MQ=255)                                                                                                                                                                                                                               tcagcaGGGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTACACGAACTGGCGGCGGTGCTGAATGACGAAGTCGGCTGTTATCGTCCAATTGCAGCAGGCGAGAGAGGGAAGGAGGGGGAACGTTTTAACGGTGTCACCGGCGGGtttgtt  >  2:690477/1‑270 (MQ=255)                                                                                                                                                                                                                                                                tGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCa                                                                                                                                    >  1:543906/1‑111 (MQ=255)                                                                                                                                                                                                                                                                  cTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAg                                      <  2:308576‑M2/203‑2 (MQ=255)                                                                                                                                                                                                                                                                  cTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACg                              >  1:276157/1‑211 (MQ=255)                                                                                                                                                                                                                                                                    ccGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGAt                                                                                                                                <  2:543897/111‑1 (MQ=255)                                                                                                                                                                                                                                                                      gcgTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTg                                  <  1:308582/203‑1 (MQ=255)                                                                                                                                                                                                                                                                       ctccatccagttctcgccttcggcaattggacgtgaacagccgacttcagcattcagcaccgccgccagttcgtggaccatttttaggtcatcctgcgccgccagtccacgaccgacgccaaccacacgttttgctttgctcaggtccacgctgcttgcggctttcgcacggcgttcgcgacagagaatttcatgacgcggag                                 <  2:308576‑M1/203‑203 (MQ=255)                                                                                                                                                                                                                                                                       ctccatccagttctcgccttcggcaattggacgtgaacagccgacttca                                                                                                                                                                                           <  1:314498‑M1/49‑49 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                          GGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTG  >  CP009273/1774912‑1775407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.