New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1775174	16 (0.420)	6 (0.160)	5/308	NT	26.8%	coding (517/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit
	?	CP009273	= 1775370	17 (0.450)					coding (713/939 nt)	ydiR	putative electron transfer flavoprotein, FAD‑binding subunit

CCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGACTACGGTCTGGTGGGCGATATCTACAAAGTCGTCCCTGCCCTGATTAGCCAGTTGAGCCGCTAATTCCCCTTTCA  >  CP009273/1775114‑1775607                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                              tggcacgcctgttaTACCTCGTCTCAGTGCCCGACAGGAACGGTACCTTATGTTGCTGCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCgg                                                                                                                                                                                                                             <  1:409611/262‑1 (MQ=255)   gTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTACACGAACTGGCGGCGGGGATGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGAGAGAACTGGATGGAGCGTGAACGTTATATTgggg                                                                                                                                                                                                                           >  1:45063/1‑273 (MQ=255)                     tcagcaGGGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTACACGAACTGGCGGCGGTGCTGAATGACGAAGTCGGCTGTTATCGTCCAATTGCAGCAGGCGAGAGAGGGAAGGAGGGGGAACGTTTTAACGGTGTCACCGGCGGGtttgtt                                                                                                                                                                                                          >  2:690477/1‑270 (MQ=255)                                                        cTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAg                                                                                                                                                                                                                                              <  2:308576‑M2/203‑2 (MQ=255)                                                        cTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACg                                                                                                                                                                                                                                      >  1:276157/1‑211 (MQ=255)                                                            gcgTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTg                                                                                                                                                                                                                                          <  1:308582/203‑1 (MQ=255)                                                                                 cgAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACtggatgga                                                                                                                                                                                                                                               >  1:589310/1‑177 (MQ=255)                                                                                     cGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGt                                                                                                                                                                                                                                           <  2:589301/177‑1 (MQ=255)                                                                                                                      agcaaagcaaAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATaa                                                                                                        >  1:427987/1‑275 (MQ=255)                                                                                                                           agcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGc                                                                                                                                                                     >  1:601425/1‑209 (MQ=255)                                                                                                                             caaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTTACGTCCAATTGCCGAAGGCGAGAACTGGATGGAgcggagcaacataaggtaccgtttctgtcgggcactgatgagaggtatctgtggt                                                                                                                                                                                        <  2:481026‑M2/188‑56 (MQ=255)                                                                                                                               aaaCGTGTGGTTTGCGTCTGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGGACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGCTCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGc                                                                                                                                                            <  1:694941/214‑1 (MQ=255)                                                                                                                               aaaCGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGAt                                                                                                                                                                 <  2:601416/209‑1 (MQ=255)                                                                                                                                 aCGGNTGGTTGGCGTCGCTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGATGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTAGATGGAgcggagcaacataaggtaccgtttatgtcgggcacagatgagaggtatcactggtgcac                                                                                                                                                                                    >  1:481033‑M2/1‑129 (MQ=255)                                                                                                                                             cGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGc                                                                                                                                                                                    >  1:358650/1‑176 (MQ=255)                                                                                                                                                 ggtcgTCGACTGGCGGCGCAGGATGACCTAAAAATCGTCCCCGAACTTGCGGCGTTGCTGAACTCTGAAGTCGGCTTTTCACTTCCAAGTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTggg                                                                                                                                                                                <  2:358644/176‑1 (MQ=255)                                                                                                                                                            ggcggcGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAgcaacataaggtaccgtttctgtcgggcactgatgagaggtatcactggt                                                                                                                                                                                             <  1:371942‑M2/152‑51 (MQ=255)                                                                                                                                                                gcgcAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAgcaacataaggtaccgtttctgtcgggcactgatgagaggtatcactggtgcac                                                                                                                                                                                         >  2:371936‑M2/1‑98 (MQ=255)                                                                                                                                                                                      tCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAgcggagcaacataaggtaccgtttctgtcgggcactgatgagag                                                                                                                                                                                                   <  1:398564‑M2/120‑45 (MQ=255)                                                                                                                                                                                       ccACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGCTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGTGGATCTCCGGGCAGATCCCGAATGTGGTTGGCGGCAACGGCGCAAAATGGATGCTGCCAATGAAACAGGAGAAAAAGGCCCCACTCCTCAACTAGGCCGACTACGGCCTAGAGGGCAAGATGTACaccgatgtccc                                         >  2:613439/1‑263 (MQ=255)                                                                                                                                                                                          cGAACTGGCGGCTGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAATGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGTTCTCTACCTGACGCTGGGGATCTCCGGGCAGATc                                                                                                                                                                <  1:477774/151‑1 (MQ=255)                                                                                                                                                                                          cGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAgcggagcaacataaggtaccgtttctgtcgggcactgatgagaggtat                                                                                                                                                                                               >  2:398557‑M2/1‑72 (MQ=255)                                                                                                                                                                                                               tgctgtaGTCGGCTGCTCACGACCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATCTGGTTggcg                                                                                                                                                >  1:492864/1‑146 (MQ=255)                                                                                                                                                                                                                  tgaaGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAg                                                                                                                                                                                                                                              <  1:314498‑M2/49‑2 (MQ=255)                                                                                                                                                                                                                  tgaaGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGc                                                                                >  1:249609/1‑207 (MQ=255)                                                                                                                                                                                                                   gaaGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCaa                                                                                                                                            <  2:492857/146‑1 (MQ=255)                                                                                                                                                                                                                      gTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTg                                                                                                                                                                                                                                          <  2:314492/49‑1 (MQ=255)                                                                                                                                                                                                                      gTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGAc                                                                            <  2:249604/207‑1 (MQ=255)                                                                                                                                                                                                                             gTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATTCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGACTACGGTCTGGTGGGCGATATCTACAACGTCGTCCCTGCCCTGATTAGCCAGTTGAGCCGCTAATTCCCCTTTCa  <  1:690486/274‑1 (MQ=255)                                                                                                                                                                                                                                                                 aGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAAt                                                                                                    >  1:622713/1‑140 (MQ=255)                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                              CCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAACGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATATGGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGACTACGGTCTGGTGGGCGATATCTACAAAGTCGTCCCTGCCCTGATTAGCCAGTTGAGCCGCTAATTCCCCTTTCA  >  CP009273/1775114‑1775607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.