New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1813583 =	25 (0.650)	5 (0.140)	5/298	NT	19.7%	coding (122/843 nt)	chbR	repressor of chb operon for N,N'‑diacetylchitobiose utilization
	?	CP009273	1813704 =	17 (0.470)					coding (1/843 nt)	chbR	repressor of chb operon for N,N'‑diacetylchitobiose utilization

GGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGTTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCGCCTTCAATCAGTT  >  CP009273/1813324‑1813854                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                tataagaAAAGAGTTATTGAAAAAGAATAACGGCGAAGCAACAAAGAAATAAGGCAAAAATTGAAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCATCGTTCAATATGCGCCTGTCACCAAACTCATAAAAACTTTGATCGTGCGAACCGACCGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGCAAATAACGCCCGGTTTATACCAGAGTAAATTCATACTAGTCGTGCTGCTGCAGTCCGCTGa                                                                                                                                                                                                                                                                  <  2:384980/271‑1 (MQ=255)                   ggTCCTGTATACCAGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGTTCAANATGCGCGTGGCACCAAACGCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCACAATAGTCGTGCTGATTCAGTCCGCTGATACTCTCAGTTTTGTta                                                                                                                                                                                                                                                 <  1:529833/274‑1 (MQ=255)                     tCCGGTATACCTGCAAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGTTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATTCTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTtata                                                                                                                                                                                                                                               <  1:574965/274‑1 (MQ=255)                                   gAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCCCAAAAAAGCGTTTACTGATCCCAACGTTCAATATGCGCGTGGCACCAAACTCATAACAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATACATAATATTCGTGCTGATGCAGTCCGCTGATACTCCCAATTATGTTATATATAAACAAAtttta                                                                                                                                                                                                                                >  2:585857/1‑271 (MQ=255)                                                                                         agcgcatctggtacagacgaaacggattgaatgagatgcgggcgaaggtaagatgaaagtgagtctggtgctggtccacgctcaggatcatttaatgacgtccatgcttgcgcgtgaactgattacttaattaattgagcttaatgaaaaactgaaggcataaggagtcgaTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGGGGCAATTTCCGGCGCGt                                                                                                                                                                           >  1:625112‑M1/172‑274 (MQ=255)                                                                                                              atGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGa                                                                                                                                                     <  1:437365/275‑1 (MQ=255)                                                                                                                            gcttcatgaacaaCTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATACAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCCTTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTc                                                                                                                                                                                   >  1:711822/12‑231 (MQ=255)                                                                                                                                cattAAAAACTTTTATGGTGCGAACCTAACGGAATCAAATCAAAATCGCCCCGTTCCAGTAAAACGCGCTTACCGTTAATCTCCTGGTAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAATCACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGTTAGTGGCAATTTCCGgc                                                                                                                                                                               <  2:711812/228‑1 (MQ=255)                                                                                                                                  aTAAAAACTTTGATGGTGCGAACCTAAAGGAATAAAAAAAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGATGTTCTAGGGCAGTGGCAATTTCCGGCGCGTTAATAAATGGCTGCATCATCGACTCATGATGCCTTCAgagtt                                                                                                                                 >  2:181648/1‑271 (MQ=255)                                                                                                                                                            aCGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGTGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAAt                                                                                                       >  1:65975/1‑275 (MQ=255)                                                                                                                                                                     aaaCAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCGCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACtctc                                                                                                                                                                                                                                                           >  1:529243/1‑118 (MQ=255)                                                                                                                                                                         aaaaTCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGtt                                                                                                                                                                                                                                                       <  2:529235/118‑1 (MQ=255)                                                                                                                                                                                            aaCCCGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAAt                                                                       <  1:181651/275‑1 (MQ=255)                                                                                                                                                                                                       cgcgtgaactgattactgaattaattgagcttcatgaaaaactgaaggcataaggagtcgaTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCaga                                                                                                                                                                                            <  1:644708‑M1/86‑2 (MQ=255)                                                                                                                                                                                                           tgaactgattactgaattaattgagcttcatgaaaaactgaaggcataaggagtcgaTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCa                                                                                                                                                                                        >  2:644699‑M1/58‑147 (MQ=255)                                                                                                                                                                                                             aaTCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCAc                                                                                               >  2:474143/1‑234 (MQ=255)                                                                                                                                                                                                                 tcCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTcc                                                                                                                                                                                  >  1:168073/1‑147 (MQ=255)                                                                                                                                                                                                                 tcCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCGATTAATTCAGTAATCAGTTCACgcgc                                                                                           <  1:474150/234‑1 (MQ=255)                                                                                                                                                                                                                     ggAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGgcg                                                                                                                                                                              <  2:168070/147‑1 (MQ=255)                                                                                                                                                                                                                      gAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTATCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGa                                             <  1:585866/275‑1 (MQ=255)                                                                                                                                                                                                                       taaagaCGCCANATTAATACCAGGGTAAATTCATAATATGCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGAc                                            <  2:65974/270‑1 (MQ=255)                                                                                                                                                                                                                                  ggTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGcat                                                                                                                                                           >  2:125708/1‑153 (MQ=255)                                                                                                                                                                                                                                      aaTACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCatcatc                                                                                                                                                       <  1:125709/153‑1 (MQ=255)                                                                                                                                                                                                                                       catgaaaaactgaaggcataaggagtcgaTGATGCAGTCCGCTGATACTCTCa                                                                                                                                                                                                                                                          <  1:280347‑M1/24‑1 (MQ=255)                                                                                                                                                                                                                                           aaaaactgaaggcataaggagtcgaTGATGCAGTCCGCTGATACTCTCAGttt                                                                                                                                                                                                                                                      >  2:280342‑M1/26‑53 (MQ=255)                                                                                                                                                                                                                                             gagTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGAGCAGCACCAGACTCACTTTCACCTTACCTTCTcc                      >  2:610897/1‑275 (MQ=255)                                                                                                                                                                                                                                              agTAAATTCATAATAGTCGTGCTGATGCAGTCCGc                                                                                                                                                                                                                                                                     >  2:563397/1‑35 (MQ=255)                                                                                                                                                                                                                                              agTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGcatca                                                                                                                                                         >  1:10108/1‑143 (MQ=255)                                                                                                                                                                                                                                                  aaTTCATAATAGTCGTGCTGATGCAGTCCGCTGAt                                                                                                                                                                                                                                                                 <  1:563406/35‑1 (MQ=255)                                                                                                                                                                                                                                                  aaTTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGa                                                                                                                                                     <  2:10108/143‑1 (MQ=255)                                                                                                                                                                                                                                                                 tGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAActgctg                                                                                                                                                                                                        >  2:521182/1‑77 (MQ=255)                                                                                                                                                                                                                                                                 tGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATNATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCGCCTTCAATCAGtt  <  1:610906/275‑1 (MQ=255)                                                                                                                                                                                                                                                                  gCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCAt                 <  1:432450/259‑1 (MQ=255)                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                GGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGTTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCGCCTTCAATCAGTT  >  CP009273/1813324‑1813854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.