New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1813583 =	25 (0.650)	5 (0.140)	5/298	NT	19.7%	coding (122/843 nt)	chbR	repressor of chb operon for N,N'‑diacetylchitobiose utilization
	?	CP009273	1813704 =	17 (0.470)					coding (1/843 nt)	chbR	repressor of chb operon for N,N'‑diacetylchitobiose utilization

ATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCGCCTTCAATCAGTTTCGTCTGTACCAGATGCGCTTCATTCAATGCCATCCGTGACTGATCCATCATGGC  >  CP009273/1813433‑1813909                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                              atGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGa                                                                                                                                                                                                            <  1:437365/275‑1 (MQ=255)                     aTAAAAACTTTGATGGTGCGAACCTAAAGGAATAAAAAAAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGATGTTCTAGGGCAGTGGCAATTTCCGGCGCGTTAATAAATGGCTGCATCATCGACTCATGATGCCTTCAgagtt                                                                                                                                                                                        >  2:181648/1‑271 (MQ=255)                                               aCGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGTGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAAt                                                                                                                                                              >  1:65975/1‑275 (MQ=255)                                                                               aaCCCGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAAt                                                                                                                              <  1:181651/275‑1 (MQ=255)                                                                                                aaTCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCAc                                                                                                                                                      >  2:474143/1‑234 (MQ=255)                                                                                                    tcCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCGATTAATTCAGTAATCAGTTCACgcgc                                                                                                                                                  <  1:474150/234‑1 (MQ=255)                                                                                                         gAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTATCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGa                                                                                                    <  1:585866/275‑1 (MQ=255)                                                                                                          taaagaCGCCANATTAATACCAGGGTAAATTCATAATATGCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGAc                                                                                                   <  2:65974/270‑1 (MQ=255)                                                                                                                         aaTACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCatcatc                                                                                                                                                                                                              <  1:125709/153‑1 (MQ=255)                                                                                                                                gagTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGAGCAGCACCAGACTCACTTTCACCTTACCTTCTcc                                                                             >  2:610897/1‑275 (MQ=255)                                                                                                                                     aaTTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGa                                                                                                                                                                                                            <  2:10108/143‑1 (MQ=255)                                                                                                                                                    tGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATNATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCGCCTTCAATCAGtt                                                         <  1:610906/275‑1 (MQ=255)                                                                                                                                                     gCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCAt                                                                        <  1:432450/259‑1 (MQ=255)                                                                                                                                                                         acgcgccggaaattgcccctgcccgagaacagcagttgtttaatggcaaaaacttccatgtgtttatctataacaaaactgagagtatcagcggactgcatcaTCGACTCCTTATGCCTTCAGTTTTTCATTAAGCTCAATTAATTAAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCTCATTCAATCCGTTTCGTCTGTACCAGATGCGCt                                     >  1:625112‑M2/104‑274 (MQ=255)                                                                                                                                                                              aGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGCCGCCCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGATCGt                                                                                                                  >  2:517369/1‑192 (MQ=255)                                                                                                                                                                                  ttGTTATANATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGCTCACGCGCAAGCATGCACGTCATTAAATGATCCTGAGCGTGGAc                                                                                                              <  1:517376/192‑1 (MQ=255)                                                                                                                                                                                      tgccactgcccgagaacagcagttgtttaatggcaaaaacttccatgtgtttatctataacaaaactgagagtatcagcggactgcatcaTCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCa                                                                                                                                                       >  2:644699‑M2/91‑147 (MQ=255)                                                                                                                                                                                          tctgcccgagaacagcagttgtttaatggcaaaaacttccatgtgtttatctataacaaaactgagagtatcagcggactgcatcaTCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCAcgcg                                                                                                                                                   <  1:644708‑M2/61‑1 (MQ=255)                                                                                                                                                                                               acacATGGAAGTTTTTGCCATTAAACAACGGCTGTTCTCGGGCAGTGGCAATTTACGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATAAAGCTCAATTAATTCAGTACTCAGTCAACGCGCAATCATGGCCGTCATTAAATTATCCTTAGCGTGGACCAGCACCAGACTAACTTTCATCTTACCTTCGCCCGAATCGCCTTCCATCAGTTTCGTCTGTCCCATATGCGCTTCCTTCAATAGNATCCGtccgcg              >  2:66511/1‑270 (MQ=255)                                                                                                                                                                                                   aTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCGCCTTCAATCAGTTTCGTCTGTACCAGATGCGCttcattca                              <  1:66512/255‑1 (MQ=255)                                                                                                                                                                                                           ttttGCCATTAAACAACTGCAGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTAGATGCATCATCGACTCCTGATGCCTTCAGTTTTTCATGAAGCTCAGTTACTTCAGTCATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACATTAATCTTACCTTCGCCCGCATCGCCTTCACTCAGCTTCGTCTGTACCAGATGCGCTCCATTCCATCCCATCCGTGACttctcgagacgggc  >  2:121188/1‑262 (MQ=255)                                                                                                                                                                                                                                           gTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACt                                                                                                  >  2:597535/1‑147 (MQ=255)                                                                                                                                                                                                                                               cAATTTCTGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACt                                                                                              <  1:597544/147‑1 (MQ=255)                                                                                                                                                                                                                                                    aaactgagagtatcagcggactgcatcaTCGACTCCTTATGCCTTCAGttttt                                                                                                                                                                                       >  2:280342‑M2/29‑53 (MQ=255)                                                                                                                                                                                                                                                        tgagagtatcagcggactgcatcaTCGACTCCTTATGCCTTCAGTTTTTCATg                                                                                                                                                                                   <  1:280347‑M2/29‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                              ATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGTAAATTCATAATAGTCGTGCTGATGCAGTCCGCTGATACTCTCAGTTTTGTTATAGATAAACACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGGCTGCATCATCGACTCCTTATGCCTTCAGTTTTTCATGAAGCTCAATTAATTCAGTAATCAGTTCACGCGCAAGCATGGACGTCATTAAATGATCCTGAGCGTGGACCAGCACCAGACTCACTTTCATCTTACCTTCGCCCGCATCGCCTTCAATCAGTTTCGTCTGTACCAGATGCGCTTCATTCAATGCCATCCGTGACTGATCCATCATGGC  >  CP009273/1813433‑1813909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.