New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1892761	30 (0.780)	4 (0.110)	4/304	NT	13.1%	coding (78/1599 nt)	yoaD	putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production
	?	CP009273	= 1892941	24 (0.640)					coding (258/1599 nt)	yoaD	putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production

CAAATACCGCGAAACCTCACGCGGTGGTCTGGCAATCAAAGTCCAGTGTGACTAATACTTCTTACTCGCCCATCTGCAACGGATGGGCGAATTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGT  >  CP009273/1892499‑1893025                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                         gatttcgcgcgAAACCTCACGCGGTGGTCTGGCAATCAAAGTCCAGTGTGACTAATACTTCTTACTCGCCCATCTGCAACGGATGGGCGAATTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCCTGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTAAGATTTGCGAACTCGTTACGCTCGCttagccc                                                                                                                                                                                                                                                              >  1:135681/8‑270 (MQ=255)                                           ccAGTGTGACTAATACTTCTTACTCGCCCCTCTGCAACGGATGGGCGAATTTATACCCGCTTTCTCGTCTGCTGTAATATTNCCCACTACNCTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCCTGCGATTTATTTCACAGCGTAACTTAAATcaaca                                                                                                                                                                                                                     <  1:465353/274‑1 (MQ=255)                                               tgtgACTAATACTTCTTACTCGCCCATCTGCAACGGATGGGCCATTTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACATTGTGGCCCTCATGCAAAACGCACGACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTAAGATTTTTGCACTATTTACCCTCGATTGGACAATGAGCGTGCGATGTATTTCACCGCGCACCTTaaaatcacaaattt                                                                                                                                                                                                                >  2:680191/1‑264 (MQ=255)                                                              agcccgcnccATATGCACCGGTTGGGTGAATTTATACCCCTTTTCTCGTTTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGc                                                                                                                                                                                                   <  2:262319/265‑1 (MQ=255)                                                                                   aTGGGCGAATTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGtaatggcaaatgggcgacagagcagggcagaccaatcagcggaagcaagacttcgctaccttcctgtaggggaaacataactttacctcattcc                                                                                                                                                                            >  1:1133‑M1/1‑181 (MQ=255)                                                                                    tGGGCGAATTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGtaatggcaaatgggcgacagagcagggcagaccaatcagcggaagcaagacttcgctacctgcctgtaggggaagcagtactttatctaattcct                                                                                                                                                                           >  1:290075‑M1/1‑180 (MQ=255)                                                                                       gCGAATTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGatttat                                                                                                                                                                                                                                             >  1:208030/1‑206 (MQ=255)                                                                                           aTTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACGACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTca                                                                                                                                                                                                                                         <  2:208026/206‑1 (MQ=255)                                                                                                      cTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCGGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGCTTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTCAATCAACACCGGGTCGTACAATTCGCCAATCAc                                                                                                                                                                                            >  1:233815/1‑240 (MQ=255)                                                                                                                tgctgTAAAATGCCCCCCACCCCTTCCACTGTGGCGTCAGGCGGTTGTCGCCATACGCTTACCGGGTGGCCCGCAGGCAAAAAGCACAACGGATCATTAAAACCTATCGGCGTAATCGAATGATTGTTGGTACGATTTGCGCACTCGTTACGtaatggcaaatgggcgacagagcagggcagaccaatcagcggaagcaagacttcgctacctgcctgtaggggaagcagtactttatctaattcctctacagcgtgattggcgaattgtactac                                                                                                                                               <  2:290069‑M1/275‑124 (MQ=255)                                                                                                                            ccccACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACt                                                                                                                                                                  >  1:351358/1‑244 (MQ=255)                                                                                                                                       ttCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCt                                                                                                                                                                                         >  2:129914/1‑210 (MQ=255)                                                                                                                                           aCTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTag                                                                                                                                                                                     <  1:129915/210‑1 (MQ=255)                                                                                                                                                   gaagaacgtttgaAGCAAAACGCGTACAGGGAGGCCCACAGTCAAAAAGCAAAACGGATCATTAAAATCTATCGGCGTAATCGAATGATTGTTTGTACGATTGGCGCACTAGTAACGtaatggcaaatgggcgacagagcaggtcagaccaatcagcggaagcaagacttcgctacctgcctgtaggggaagcagtactttatctaattcctctacagcgtgattggcgaattgtactacccgttgttgatttaagttacgctgagaaat                                                                                                                 <  2:1133‑M1/264‑154 (MQ=255)                                                                                                                                                    tCAGGCGTTTGTCGCAATACGTTCACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATNCGCCAATCACGCt                                                                                                                                                                                         >  1:485441/1‑197 (MQ=255)                                                                                                                                                        gCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTag                                                                                                                                                                                     <  2:485434/197‑1 (MQ=255)                                                                                                                                                            ttGACGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGTCTCATTAAAACCTTTCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTc                                                                                                     <  2:94553/273‑1 (MQ=255)                                                                                                                                                                                  tGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCg                                                                                                                                                                                                                                                       >  2:273457/1‑105 (MQ=255)                                                                                                                                                                                    gCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAg                                                                                                                                                                                                                                                         >  1:535038/1‑101 (MQ=255)                                                                                                                                                                                    gCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGCAAGGTAGCGAAGGCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTCcgtacacattc                                                                           <  2:617495‑M2/275‑12 (MQ=255)                                                                                                                                                                                      ccGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCg                                                                                                                                                                                                                                                   <  1:273462/105‑1 (MQ=255)                                                                                                                                                                                        gtaTGCAAAAAGCACAACTGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGTGTTGCGCACTCGTTACGCTCGCTTCGACNCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGACCATTTGCCATTACGTAAACAGGCGGCa                                                                       <  1:530303/273‑1 (MQ=255)                                                                                                                                                                                        gCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTg                                                                                                                                                                                                                                                     <  2:535030/101‑1 (MQ=255)                                                                                                                                                                                              aaaaaGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGCTAcgct                                                                                                                                                                                                                                                                        <  2:320104/76‑1 (MQ=255)                                                                                                                                                                                               aaaaGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATcaaca                                                                                                                                                                                                                     >  2:86351/1‑126 (MQ=255)                                                                                                                                                                                                   gCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACgg                                                                                                                                                                                                                 <  1:86352/126‑1 (MQ=255)                                                                                                                                                                                                         cgggtcatcactgccTCTCGTCGTAGTCCAGTGTTTTTTTGTCCGATTTGCCCACTCTTTACGCTCGCTTCGAACCGGAGCCGTCGCTTTATCTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACATGCATGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCg                                                      <  2:49505/262‑1 (MQ=255)                                                                                                                                                                                                            aTCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATc                                                                                                                                                                                                                         >  1:700383/1‑109 (MQ=255)                                                                                                                                                                                                                ttAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATcaaca                                                                                                                                                                                                                     <  2:700374/109‑1 (MQ=255)                                                                                                                                                                                                                  aaaaCCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTAcgct                                                                                                                                                                                                                                                                        <  2:515342/56‑1 (MQ=255)                                                                                                                                                                                                                          tcgtcgTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATc                                                                                                                                                                                                                         >  1:303474/1‑95 (MQ=255)                                                                                                                                                                                                                          tcgtcgTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAgg                                                                                                                                                                                  >  1:695025/1‑134 (MQ=255)                                                                                                                                                                                                                              cgtAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATcaaca                                                                                                                                                                                                                     <  2:303468/95‑1 (MQ=255)                                                                                                                                                                                                                              cgtAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAAtt                                                                                                                                                                              <  2:695016/134‑1 (MQ=255)                                                                                                                                                                                                                                       aTGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCg                                                                                                                                                                                                                                                       >  2:321516/1‑52 (MQ=255)                                                                                                                                                                                                                                           ttgtttgtACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCg                                                                                                                                                                                                                                                   <  1:321522/52‑1 (MQ=255)                                                                                                                                                                                                                                                      aTTTGCGCACTCGTTACGCTCGCGTCGCCAATGAGCGTGCGCTTTCTTTCACAACGTAACTTAAATCAACAACGGAGATTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCATCCAATACACGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTTTGCCCTGTCATGTCGCCCCTTCGCCATTAAGTAACCAGGCGTCAACACTACACACAGTGCGACCCATTGGCATGGTGAANAACGGAACACTAAATTGTTCCatctt         >  2:463081/1‑271 (MQ=255)                                                                                                                                                                                                                                                             gaatgtgtacggaatggcaaatgggcgacagagcagggcagaccaatcagcggaagcaagccttcgctaccttgctgtaggggaagcagtactttatctaattcctctacagcgtgattggcgaattgtactacccgttgttgatttaagttacgctgtgaaataaatcgcacgctcagggtcgaagcgagcgtaacgagtgcgcaaatcgtacaaacaatcattcgattacgacgataggttttaatgatccgttgtgctttttgcatgcgggc  <  2:617495‑M1/268‑265 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                         CAAATACCGCGAAACCTCACGCGGTGGTCTGGCAATCAAAGTCCAGTGTGACTAATACTTCTTACTCGCCCATCTGCAACGGATGGGCGAATTTATACCCGCTTTCTCGTCTGCTGTAATATTCCCCACTACACTTCCACTGTTGCGTCAGGCGTTTGTCGCCATACGCTTACAGGGTGGCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGT  >  CP009273/1892499‑1893025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.