New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1892761	30 (0.780)	4 (0.110)	4/304	NT	13.1%	coding (78/1599 nt)	yoaD	putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production
	?	CP009273	= 1892941	24 (0.640)					coding (258/1599 nt)	yoaD	putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production

GCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATTCTGGCTGAACTTCCTGCACCGCAACCACTTTTACGCCTGACGATCGACCGTGCCCTGATTAAAGGCAGTCCGGTTTTGATTCAATGGACGCCTGCAGCGGGCAGTAGCAATGCTGGGGTCATGGA  >  CP009273/1892678‑1893177                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                             gCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGCAAGGTAGCGAAGGCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTCcgtacacattc                                                                                                                                                                                                                                   <  2:617495‑M2/275‑12 (MQ=255)     gtaTGCAAAAAGCACAACTGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGTGTTGCGCACTCGTTACGCTCGCTTCGACNCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGACCATTTGCCATTACGTAAACAGGCGGCa                                                                                                                                                                                                                               <  1:530303/273‑1 (MQ=255)                      cgggtcatcactgccTCTCGTCGTAGTCCAGTGTTTTTTTGTCCGATTTGCCCACTCTTTACGCTCGCTTCGAACCGGAGCCGTCGCTTTATCTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACATGCATGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCg                                                                                                                                                                                                              <  2:49505/262‑1 (MQ=255)                                                                   aTTTGCGCACTCGTTACGCTCGCGTCGCCAATGAGCGTGCGCTTTCTTTCACAACGTAACTTAAATCAACAACGGAGATTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCATCCAATACACGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTTTGCCCTGTCATGTCGCCCCTTCGCCATTAAGTAACCAGGCGTCAACACTACACACAGTGCGACCCATTGGCATGGTGAANAACGGAACACTAAATTGTTCCatctt                                                                                                                                                                 >  2:463081/1‑271 (MQ=255)                                                                                             gACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGcc                                                                                                                                                                                                   <  1:6668/215‑1 (MQ=255)                                                                                                         gCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCAtt                                                                                                                                                                                                       >  2:266996/1‑199 (MQ=255)                                                                                                             tttatttCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGcc                                                                                                                                                                                                   <  1:267001/199‑1 (MQ=255)                                                                                                                atttCTCAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGACCTGCTCTGTCGCCCATTTGCCATTAcgttactagtgcgccaatcgtacaaacaatcattcgattacgccgatagattttaatgatccgttttgctttttgactgtgggcctccctgtacgcgttttgcttcaaacgttcttc                                                                                                                         <  2:1133‑M2/270‑118 (MQ=255)                                                                                                                        gCGTTACTTTAATCAACAACGTGTAGTACAATTCGCCAATCAAGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGNCAGGTAGCNAAGTCGTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCACACTTTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTACAGCATTTTTGGTTATCGCAATGTACCCGTCGTTGACATTCTGGCTGAACTTCCTGCAc                                                                                                            <  1:463088/275‑1 (MQ=255)                                                                                                                                              gtagtaCAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTAcgtaacgagtgcgcaaatcgtaccaacaatcattcgattacgccgataggttttaatgatccgttgtgctttttgcctgcgggccacccggtaagcgtatggcgacaaccgcctgacgccacagtggaaggggtggggggcattttacagca                                                                                      <  2:290069‑M2/275‑153 (MQ=255)                                                                                                                                                                          agGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTAcgtaacgagtgcgcaaatcgtacaaacaatcattcgattacgacgataggttttaatgatccgttgtgctttttgcatgcgggccaccctgtaagcgtatggcgacaaacgcctgacgcaacagtggaagtgtagtggggaatattacagcagacgagaaagcgggtataaattcgccca                                                          >  1:290075‑M2/1‑95 (MQ=255)                                                                                                                                                                           ggAATGAGGTAAAGTTATGTTTCCCCTACAGGAAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTAcgtaacgagtgcgcaaatcgtacaaacaatcattcgattacgacgataggttttaatgatccgttgtgctttttgcatgcgggccaccctgtaagcgtatggcgacaaacgcctgacgcaacagtggaagtgtagtggggaatattacagcagacgagaaagcgggtataaattcgcccat                                                         >  1:1133‑M2/1‑94 (MQ=255)                                                                                                                                                                               ttAGATAAAGTACTGCTTCCCCTAGAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGa                                                                                                                                                                                                             >  1:500568/1‑123 (MQ=255)                                                                                                                                                                                 aGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACtg                                                                                                                                                                                                                  >  1:258596/1‑116 (MQ=255)                                                                                                                                                                                 aGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTg                                                                                                                                                                                                      >  2:680442/1‑128 (MQ=255)                                                                                                                                                                                 aGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGCCGGCACCCTTTATTGCTNCAGCATTTTTGGTTATCGCAATGTGCCCGTCTTGGACATTCTGGCTGAACTTCCTGCACCGCAACCACTTTTACGCCTTACGCTCGACCGTCCCCTGATTAAAGGCCGTCCggct                                                    >  1:653722/1‑272 (MQ=255)                                                                                                                                                                                   aTAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCa                                                                                                                                                                                                         <  2:500561/123‑1 (MQ=255)                                                                                                                                                                                     aaaGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCg                                                                                                                                                                                                              <  2:258591/116‑1 (MQ=255)                                                                                                                                                                                     aaaGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCt                                                                                                                                                                                                  <  1:680451/128‑1 (MQ=255)                                                                                                                                                                                           ttgcctcacccaaangctggTAGCGAAGTCTTGCTTCCCCTGATTGGTCGGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATTCTGGCTGAACTTCCTGCACCGCAACCACTTTTACGCCTGACGATCGACCGTGCCCTGATTAAAGGCAGTCCGGTTTTGATTCAATg                                         <  2:534267/262‑1 (MQ=255)                                                                                                                                                                                                tCCCCTACAGGCAGGTCGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATNCTGGCTGAACTTCCTGCACCGCAACCACTTTTACGCCTGACGATCGACCGTGCCCTGATTAAAGGCAGTCCGGTTTTGATTc                                             >  1:534275/1‑266 (MQ=255)                                                                                                                                                                                                 ccccTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACtg                                                                                                                                                                                                                  >  2:503103/1‑100 (MQ=255)                                                                                                                                                                                                     tACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCg                                                                                                                                                                                                              <  1:503110/100‑1 (MQ=255)                                                                                                                                                                                                          gcaggTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAggc                                                                                                                                                                                                                                   >  2:667294/1‑74 (MQ=255)                                                                                                                                                                                                             ggTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATTCTgg                                                                                                                           >  1:16179/1‑175 (MQ=255)                                                                                                                                                                                                              gTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCa                                                                                                                                                                                                                               <  1:667303/74‑1 (MQ=255)                                                                                                                                                                                                                 gCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATTCTGGCTGa                                                                                                                       <  2:16179/175‑1 (MQ=255)                                                                                                                                                                                                                         tttcTTTCGCTGATTGTTTTGCCCTGCGTTGGCTCACATTGGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTGTATCGCTCCAGCATTTTTGGTTATCGCAATGTTCCCGTCGTGGACATTCTGGCTGAACTTCCTGCACCGGAACCACTTTTACGCCTGACGATCGACCGTGCCCTGATTAAAGGCAGTCCGGTTTTGATTCAATGGACGCCTGCAGCGGGCAGTAGCAATGCTg            <  1:680200/271‑1 (MQ=255)                                                                                                                                                                                                                                   tGATTGGTCTGCTCTGCTCTGTCTCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATTCTGGCTGAACTTCCTGCACCGCAACCACTTTTACGCCTGACGATCGACCGTGCCCTGATTAAAGGCAGTCCGGTTTTGATTCAATGGACGCCTGCAGCGGGCAGTAGAAATGCTGGGGTCATGga  <  1:147305/274‑1 (MQ=255)                                                                                                                                                                                                                                                                       tACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATTCTGGCTGAACTTCCTGCACCGCAACCACTTTTACGCCTGACGATCGACCGTGCCCTGATTAAAGGCAGTCCGGTTTTGATTCAATGGACGCCTGCAGc                             >  2:49837/1‑211 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                             GCCCGCATGCAAAAAGCACAACGGATCATTAAAACCTATCGTCGTAATCGAATGATTGTTTGTACGATTTGCGCACTCGTTACGCTCGCTTCGACCCTGAGCGTGCGATTTATTTCACAGCGTAACTTAAATCAACAACGGGTAGTACAATTCGCCAATCACGCTGTAGAGGAATTAGATAAAGTACTGCTTCCCCTACAGGCAGGTAGCGAAGTCTTGCTTCCGCTGATTGGTCTGCCCTGCTCTGTCGCCCATTTGCCATTACGTAAACAGGCGGCAAAACTCCAAACTGTGCGATCCATTGGCCTGGTGCAAGACGGCACACTTTATTGCTCCAGCATTTTTGGTTATCGCAATGTGCCCGTCGTGGACATTCTGGCTGAACTTCCTGCACCGCAACCACTTTTACGCCTGACGATCGACCGTGCCCTGATTAAAGGCAGTCCGGTTTTGATTCAATGGACGCCTGCAGCGGGCAGTAGCAATGCTGGGGTCATGGA  >  CP009273/1892678‑1893177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.