New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1975789 =	26 (0.680)	6 (0.160)	5/302	NT	21.4%	coding (80/801 nt)	otsB	trehalose‑6‑phosphate phosphatase, biosynthetic
	?	CP009273	1976245 =	19 (0.510)					coding (777/987 nt)	araH	fused L‑arabinose transporter subunits of ABC superfamily: membrane components

CTGAGCGATGACTGTATGCAGTTGCACGCTAATATCACGCGCAATCGCATCCGGCAGATGAACGATATGTGTTTTACCATTGATGTCACGGCGCTCCGCCCCATGCACGCCCGCTAACGGGAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAAC  >  CP009273/1975521‑1975978                                                                                                                                                                                                                                                                             |                                                                                                                                                                                              ctgaaggATGACTGTATGCAGTAGCACGCTCATATCACGCGCAATCGCATCGGGGAGATGAACGCTATTTGATTTACCATTGATGTCACGGCCCTACGCCCCATGTCTGATCGCTATCTGGAAGCGCCAAGGAGTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATAAAAATGACAAAGCACCATCCCTTCCGTTTGCCAGCAACTCTAGTCCGTGCAGAAAATTGTAAGGCACGACGCCCTGCTCGGTGTGCTGTTTGATTTctcc                                                                                                                                                                                           >  2:156560/7‑270 (MQ=255)                       tGCACGCTAATATCACGCGCAATCGCATCCGGCAGATGAACGATATGTGTTTTACCATTGATGTCACGGCGCTCCGCCCCATGCACGCCCGCTAACGGGAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCaaaaa                                                                                                                                                                    >  1:244980/1‑274 (MQ=255)                         cACGCTAATATCACGCGCAATCGCATCCGGCAGATGAACGATATGTGTTTTACCATTGATGTCACGGCGCTCCGCCCCATGCACGCCCGCTAACGGGAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAAcc                                                                                                                                                                 >  1:366403/1‑275 (MQ=255)                                        cgcAATCGCATCCGGCAGATGAACGATATGTGTTTTACCATTGATGTCACGGCGCTCCGCCCCATGCACGCCCGCTAACGGGAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGNAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGAATATTTCGCgg                                                                                                                                                  >  1:549369/1‑275 (MQ=255)                                                                 atatGTGTTTTACCATTGATGTCACGGCGCTCCGCCCCATGCACGCCCGCTAACGGGAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACgg                                                                                                                         >  1:608926/1‑275 (MQ=255)                                                                                      aacaccctggcgattggcgggaacgaagaggccgcgcgtctggcgggtgtaccggttgttcgcaccaaaattattatctttgttctctcaggcctggtatcagcgatagccggaattattctggcttcacgtatgaccagtgggcagccaatgacgtcgattggttatgagctgattgttatcTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTctcctc                                                                                                    <  2:237354‑M1/92‑1 (MQ=255)                                                                                                  gCCCCATGCACGCCCGCTAACGGGAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGTCACGACGACCTGNTCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCCTCTCttt                                                                                           >  1:597180/1‑272 (MQ=255)                                                                                                                       gggAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAAcgcg                                                                   <  2:608917/275‑1 (MQ=255)                                                                                                                              gaaaaGGTTTTGGAAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCAGCATCACTGGAGGTTGCCAGTAGCTGTAGTCCTTGGAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACa                                                            <  2:597171/272‑1 (MQ=255)                                                                                                                                                       caaaattattatctttgttctctcaggcctggtatcagcgatagccggaattattctggcttcacgtatgaccagtgggcagccaatgacgtcgattggttatgagctgattgttatcTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACagacatgtaattatataccttgttac                                   <  2:660225‑M1/157‑12 (MQ=255)                                                                                                                                                                    cgcCCTGATATCAATGCCAATGCTTCATGACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAACCCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCNCCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTTCGCAGAACGCGCTTTACAGACTTGTAAGTATAGACAGTGTGACGGGGGTCGCCAt                       >  1:491499/1‑274 (MQ=255)                                                                                                                                                                      tgttctctcaggcctggtatcagcgatagccggaattattctggcttcacgtatgaccagtgggcagccaatgacgtcgattggttatgagctgattgttatcTCCGCCAGCGTTCCATCAANATCAAAAAACCATGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTg                    >  1:609570‑M1/104‑275 (MQ=255)                                                                                                                                                                      tgttctctcaggcctggtatcagcgatagccggaattattctggcttcacgtatgaccagtgggcagccaatgacgtcgattggttatgagctgattgttatcTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTg                    >  1:237359‑M1/104‑275 (MQ=255)                                                                                                                                                                      cccTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCAGCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTg                    <  1:396666/275‑1 (MQ=255)                                                                                                                                                                       ccTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGa                                                          >  2:618998/1‑236 (MQ=255)                                                                                                                                                                        ttctctcaggcctggtatcatcgatagcctgaattattctggcttcacgtatgaccagtgggcagccaatgacgtcgattggttatgagctgattgtcatcTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCa                  >  1:382660‑M1/102‑275 (MQ=255)                                                                                                                                                                           atatCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATg                                                      <  1:619007/236‑1 (MQ=255)                                                                                                                                                                                 atgccaatgcACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCATTCCATCAAGATCAAAAAACCAGGCATATTTcg                                                                                                                                                     >  2:121482/1‑135 (MQ=255)                                                                                                                                                                                     cgattcACCTTTACTTGCGTTTGCCAGTAGCTGTAGTCCGTGCAGAATATTGTCAGGCACGACGACCTGCTCGGGATGCGGTTTGATTTCCGCCAGCTTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGATAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGcc     <  1:156627/270‑1 (MQ=255)                                                                                                                                                                                     caatgcACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCATTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGa                                                                                                                                                 <  1:121483/135‑1 (MQ=255)                                                                                                                                                                                        atcagcgatagccggaattattctggcttcacgtatgaccagtgggcagccaatgacgtcgattggttatgagctgattgttatcTCCGCCAGCGTTCCATCAAGATCAAAAAACCNGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAAc  >  1:660234‑M1/86‑275 (MQ=255)                                                                                                                                                                                             cATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGa                                                          >  1:144597/1‑214 (MQ=255)                                                                                                                                                                                                 aCTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATg                                                      <  2:144596/214‑1 (MQ=255)                                                                                                                                                                                                           gCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGa                                                          >  1:451327/1‑200 (MQ=255)                                                                                                                                                                                                               gTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATg                                                      <  2:451320/200‑1 (MQ=255)                                                                                                                                                                                                                                         tCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTa                                                              >  1:387328/1‑166 (MQ=255)                                                                                                                                                                                                                                            ggCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGa                                                          >  1:129023/1‑167 (MQ=255)                                                                                                                                                                                                                                             gCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGa                                                          <  2:387322/166‑1 (MQ=255)                                                                                                                                                                                                                                              cACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATa                                                                                                                                               >  1:414698/1‑80 (MQ=255)                                                                                                                                                                                                                                                cgacgaCCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATg                                                      <  2:129022/167‑1 (MQ=255)                                                                                                                                                                                                                                                  acgacCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTc                                                                                                                                           <  2:414691/80‑1 (MQ=255)                                                                                                                                                                                                                                                           tCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGa                                                          >  1:310986/1‑152 (MQ=255)                                                                                                                                                                                                                                                               gATGCGGTTTGATTTCCGCTAGCGTTCCATCAAGATCAAAAACCCCGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCCCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACATACATg                                                      <  2:310980/152‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                              CTGAGCGATGACTGTATGCAGTTGCACGCTAATATCACGCGCAATCGCATCCGGCAGATGAACGATATGTGTTTTACCATTGATGTCACGGCGCTCCGCCCCATGCACGCCCGCTAACGGGAAGCGATAAGGTTTTGCCAGTGCGTCAAGCTCCACCATTGAGCGCCCTGATATCAATGCCAATGCACCATCACTTGCGGTTGCCAGTAGCTGTAGTCCTTGCAGAATATTGTCAGGCACGACGACCTGATCGGGATGCGGTTTGATTTCCGCCAGCGTTCCATCAAGATCAAAAAACCAGGCATATTTCGCGGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAAC  >  CP009273/1975521‑1975978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.