New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1975789 =	26 (0.680)	6 (0.160)	5/302	NT	21.4%	coding (80/801 nt)	otsB	trehalose‑6‑phosphate phosphatase, biosynthetic
	?	CP009273	1976245 =	19 (0.510)					coding (777/987 nt)	araH	fused L‑arabinose transporter subunits of ABC superfamily: membrane components

CCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTT  >  CP009273/1975974‑1976427                                                                                                                                                                                                                                                                                |                                                                                                                                                                                       acaggtggtATGGCGGTGGGGTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCAGCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGAt                                                                                                                                                                                      <  1:355897/266‑1 (MQ=255)                gTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAAACAGCCCATAAc                                                                                                                                                                     >  1:12747/1‑275 (MQ=255)                                    tcGCTAAATTGTTGCAGAAAAAAGCATCCGACAGTCCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTg                                                                                                                                                  <  2:168562/274‑1 (MQ=255)                                        aaaattgtgagcgAAAAAAGCAGTCGACAGTGCTTTTCGATTTTTGCTTGGAAGGGTCGAAGATCACCGCTGGCAGGAGGATTAAGCCGCGAACCCAGTACTGCGAGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGGGGCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCa                                                                                                                                              <  2:12747/263‑1 (MQ=255)                                                                      tGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGATTTACACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAACCAGAATAATTcc                                                                                                                 >  1:67377/1‑274 (MQ=255)                                                                                  gttggctgttcttcgttgcaaatggcgacccccgtcacactgtctatacttacatgtctgtaaagcgcgttctgcgcaacacaataagaaaagagaaggaggagaaccgggtgacagaaccgttaaccgaaacccctgaactatccgcgaaatatgccnggttttttgatcttgatggaacgctggcggaGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGAt                                                                                                    >  1:660234‑M2/191‑275 (MQ=255)                                                                                                  tgcaaatggcgacccccgtcacactgtctatacttacatgtctgtaaagcgcgttctgcgcaacacaataagaaaagagaaggaggagaaccgggtgacagaaccgttaaccgaaacccctgaactatccgcgaaatatgcctggttttttgatcttgatggaacgctggcggaGATGACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCAGGCTATCGATGATACCAGGCCTGAGAGaa                                                                                    >  1:382660‑M2/175‑275 (MQ=255)                                                                                                    caaatggcgacccccgtcacactgtctatacttacatgtctgtaaagcgcgttctgcgcaacacaataagaaaagagaaggaggagaaccgggtgacagaaccgttaaccgaaacccctgaactatccgcgaaatatgcctggttttttgatcttgatggaacgctggcggaGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACa                                                                                  >  1:237359‑M2/173‑275 (MQ=255)                                                                                                    caaatggcgacccccgtcacactgtctatacttacatgtctgtaaagcgcgttctgcgcaacacaataagaaaagagaaggaggagaaccgggtgacagaaccgttaaccgaaacccctgaactatccgcgaaatatgcatggttttttgatnttgatggaacgctggcggaGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACa                                                                                  >  1:609570‑M2/173‑275 (MQ=255)                                                                                                                   gtaacaaggtatataattacatgtctgtaaagcgcgttctgcgcaacacaataagaaaagagaaggaggagaaccgggtgacagaaccgttaaccgaaacccctgaactatccgcgaaatatgcctggttttttgatcttgatggaacgctggcggaGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTg                                                                   <  2:660225‑M2/118‑1 (MQ=255)                                                                                                                                                 cgAAGGGAGAANAATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTGCAGAGAAAAGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGTTGCGAACAACCGGTACACCCGCCAGAcgc                                     <  2:67376/275‑1 (MQ=255)                                                                                                                                                                tAAGCAGGTTCATGGCGTTTTCCCTGGTGCCTAAAATTAAGCTACCCGCCACCACATATGAGATTTATCCGATGCAACCAGTCAGAGAAAAGGCAAATAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAAACGCCGTTATTGGATGCCCAATGGTCATACGTGAAGCCAGAATAATTCCGACTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGtt                       <  2:712728/274‑1 (MQ=255)                                                                                                                                                                       gTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATaa                                                                                                                                                                                    >  1:137286/1‑110 (MQ=255)                                                                                                                                                                           aTGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAAt                                                                                                                                                                                <  2:137285/110‑1 (MQ=255)                                                                                                                                                                                 ttttCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATaa                                                                                                                                                                                    >  1:216815/1‑100 (MQ=255)                                                                                                                                                                                   ttCCACGGTGCCTAAAATTAAGATACTCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTACAACGCAGGCGGATATAACAATCAGCTCATAACCAATCGACGTAATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTTATACAAGGCAGGAGAGAACAAATATAATAATTTTGGGTCGAACAAACGTAACCACCGCCAGCCGCCCGTCCTCATCGTTCACGCCatcaccacggcttg   >  2:181476/1‑262 (MQ=255)                                                                                                                                                                                    tCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCAc                                                                                                                                             >  1:293988/1‑136 (MQ=255)                                                                                                                                                                                    gaggagaaccgggtgacagaaccgttaaccgaaacccctgaactatccgcgaaatatgcctggttttttgatcttgatggaacgctggcggaGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGtt  <  2:237354‑M2/183‑1 (MQ=255)                                                                                                                                                                                     ccACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAACACGCAGGCGGAGATAACAAt                                                                                                                                                                                <  2:216811/100‑1 (MQ=255)                                                                                                                                                                                        cGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGt                                                                                                                                         <  2:293982/136‑1 (MQ=255)                                                                                                                                                                                           tGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTcc                                                                                                                 >  2:132881/1‑157 (MQ=255)                                                                                                                                                                                               tAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCt                                                                                                             <  1:132882/157‑1 (MQ=255)                                                                                                                                                                                                       aGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTg                                                                                                                                                  >  2:441553/1‑112 (MQ=255)                                                                                                                                                                                                       aGATACCCGCCACCACATATGAGATTGTTCCGATTCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGACATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGTGAACaa                                                                                 >  1:465889/1‑177 (MQ=255)                                                                                                                                                                                                           aCCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCa                                                                                                                                              <  1:441560/112‑1 (MQ=255)                                                                                                                                                                                                           aCCCGCCACAACATATGAGAGTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCAAAAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGat                                                                             <  2:465882/177‑1 (MQ=255)                                                                                                                                                                                                                              aTTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTg                                                                                                                                                      >  1:316912/1‑85 (MQ=255)                                                                                                                                                                                                                                  ttCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTg                                                                                                                                                  <  2:316906/85‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                       CCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACCACATATGAGATTTTTCCGATGCCACCTTTCAGAGAAACGCCACCTAAAACGCAGGCGGAGATAACAATCAGCTCATAACCAATCGACGTCATTGGCTGCCCACTGGTCATACGTGAAGCCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTT  >  CP009273/1975974‑1976427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.