New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1999222	27 (0.700)	4 (0.110)	4/300	NT	13.2%	coding (29/366 nt)	fliT	putative flagellar synthesis and assembly chaperone
	?	CP009273	= 1999299	27 (0.740)					coding (106/366 nt)	fliT	putative flagellar synthesis and assembly chaperone

GTCAAAAGCGATCAACATCATTGAGAACGGACTGCGGGTGAGTCTTGATGAAGAGAGCAAAGACGAACTAACCCAAAACTTGATTGCTCTTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAA  >  CP009273/1998957‑1999493                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                gTCAAAAGCGATCAACATCATTGAGAACGGACTGCGGGTGAGTCTTGATGAAGAGAGCAAAGACGAACTAACCCAAAACTTGATTGCTCTTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAACGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGcaaca                                                                                                                                                                                                                                                                        >  1:705027/1‑275 (MQ=255)                                       tgtgTCTTTATGAAGAGAGCAAAGACGAACTAACCCAAACCTTGATTGCTCTTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCACTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCaa                                                                                                                                                                                                                                  <  1:336517/272‑1 (MQ=255)                                                        agCAAAGACGAACTAACCCAAAACGTGATGGCTCTTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGANGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGa                                                                                                                                                                                                                  >  1:488386/1‑274 (MQ=255)                                                                                   aTTGCTCTTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATgg                                                                                                                                                                                                                    >  2:123429/1‑245 (MQ=255)                                                                                       ctctTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACg                                                                                                                                                                                                                <  1:123430/245‑1 (MQ=255)                                                                                          tttATAGTTATATGGTCAGGCGCTTGATGCCAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATg                                                                                                                                                                               <  2:488379/275‑1 (MQ=255)                                                                                                 ttttatGGTCAGGCGCTTGCTGCAAGCCAATTTCCCCAACGTTGTCTCCGCAGTCGAAGAAGTTGAAGCATTAATGCTCAATATTGACGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCa                                                                                                                                                                        <  2:213833/272‑1 (MQ=255)                                                                                                           aGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCgg                                                                                                                                                                            >  1:213837/1‑261 (MQ=255)                                                                                                            ggCGCTTGCTGCAAGCCAACTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGtt                                                                                                                                                                                                                                             >  1:580618/1‑195 (MQ=255)                                                                                                              cgcTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                  <  1:546090‑M2/236‑3 (MQ=255)                                                                                                                  tgctgcAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                              >  2:546081‑M2/1‑230 (MQ=255)                                                                                                                       cAAGCCAATTTACGCAANGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACTACTCGTCGAAAAAAGGCAGCTCATGTTACGCCTGGCACCGgaag                                                                                                                                                                                                                            <  1:515476/201‑1 (MQ=255)                                                                                                                               tttACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATc                                                                                                                                                                                                        >  2:264122/1‑213 (MQ=255)                                                                                                                                   cGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCa                                                                                                                                                                                                    <  1:264127/213‑1 (MQ=255)                                                                                                                                                     gTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggctttttt                                                                                                                                                                                                                     >  2:434943‑M1/1‑118 (MQ=255)                                                                                                                                                      tCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGcc                                                                                                                                                                                                                                        >  2:80238/1‑158 (MQ=255)                                                                                                                                                         aagaagTCGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgac                                                                                                                                                                                                                 <  1:434950‑M1/178‑65 (MQ=255)                                                                                                                                                          agaagTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGc                                                                                                                                                                                                                                    <  1:80239/158‑1 (MQ=255)                                                                                                                                                           gaagTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttt                                                                                                                                                                                                                      >  1:233510‑M1/1‑112 (MQ=255)                                                                                                                                                               tGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcga                                                                                                                                                                                                                  <  2:233505‑M1/171‑64 (MQ=255)                                                                                                                                                                ggAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGACTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCCTCACCAGCGAAATGGCTTATGTGAATGCGGTGCAGGAGAATGCACATTTGACTGAAGAGTTTGACCCGTCCAACACGATGCAGGAGCAGCACCGcc                                                                                                          >  1:355957/1‑274 (MQ=255)                                                                                                                                                                    gCNTTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGACCAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                              >  1:512853‑M2/1‑180 (MQ=255)                                                                                                                                                                                aaTATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAAGAATGGTACGAACTAATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCACCGCCCGATGCTGCGCCTGAt                                                                                          >  1:623113/1‑274 (MQ=255)                                                                                                                                                                                                 gAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACAAAAGCaa                                                                        >  1:406566/1‑275 (MQ=255)                                                                                                                                                                                                                  ccccTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATc                                                                                                                                                                                                        >  1:370856/1‑130 (MQ=255)                                                                                                                                                                                                                      ttcttTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCa                                                                                                                                                                                                    <  2:370850/130‑1 (MQ=255)                                                                                                                                                                                                                             aTTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGt                                                                     >  2:610631/1‑250 (MQ=255)                                                                                                                                                                                                                                 aGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAg                                                                 <  1:610640/250‑1 (MQ=255)                                                                                                                                                                                                                                   gACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATc                                                                                                                                                                                                        >  2:120696/1‑113 (MQ=255)                                                                                                                                                                                                                                       cAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCa                                                                                                                                                                                                    <  1:120697/113‑1 (MQ=255)                                                                                                                                                                                                                                             gatgaACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGTCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAACACAGTGAAGCAGCTATAACAGCTTGATATTGATTAAATGGCGGAAc                            >  2:395867/1‑275 (MQ=255)                                                                                                                                                                                                                                                      tGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGc                                                                                                                                                                                                                                                        >  2:70975/1‑46 (MQ=255)                                                                                                                                                                                                                                                      tGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcggtc                   >  1:138579/1‑275 (MQ=255)                                                                                                                                                                                                                                                          ccGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGc                                                                                                                                                                                                                                                    <  1:70976/46‑1 (MQ=255)                                                                                                                                                                                                                                                                    atTTCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggcgaaa                                                                                                                                                                                              <  2:145607‑M1/90‑84 (MQ=255)                                                                                                                                                                                                                                                                     tttCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggcgaaatataaatgcggtgcatggttcatcagactgggtcctgaatcaaagaaggggagagtaacgactctttccaggcatcggcaatattgcgcattaatgcttccacttcttcgactgcggagacatcgttgcgtaaattggcttgcagca                                           >  2:546081‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                                     tttCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggc                                                                                                                                                                                                  >  1:80143‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                                     tttCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgcca                                                                                                                                                                                                     >  1:300042‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                                     tttCGCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgcca                                                                                                                                                                                                     >  1:137837‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                                     tttCGCtggcgatgagttcgtcccattggtcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggcgaaatataaatgcggtgcatggttcatcagactgggtcctgaatcaaagaaggggagagtaacgactctttccaggcatcggcaatattgcgcattaangc                                                                                             >  1:512853‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                                     tttCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaat                                                                                                                                                                                             <  2:145607‑M2/90‑8 (MQ=255)                                                                                                                                                                                                                                                                     tttCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                  <  2:80142‑M2/85‑3 (MQ=255)                                                                                                                                                                                                                                                                       tCGCCTGCTAACAACTCGTCGTAAAAAGCCAGCTCATGGTACGCCGGGCAACGGAAGAACAAAGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTAGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCaaaaa  <  1:227200/275‑1 (MQ=255)                                                                                                                                                                                                                                                                        cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                  <  2:300036‑M2/82‑3 (MQ=255)                                                                                                                                                                                                                                                                        cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                  <  2:137836‑M2/82‑3 (MQ=255)                                                                                                                                                                                                                                                                        cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGaa                                                                                                                                                                                 >  1:217627/1‑99 (MQ=255)                                                                                                                                                                                                                                                                        cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCa                                                                                                                        >  2:641916/1‑156 (MQ=255)                                                                                                                                                                                                                                                                        cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACACCGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCaaaa   >  1:340526/1‑273 (MQ=255)                                                                                                                                                                                                                                                                        cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCCGTCATCGGttacata   >  2:104807/1‑267 (MQ=255)                                                                                                                                                                                                                                                                         gCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggcgaaatataaatgcggtgcatggttcatcagactgggtcctgaatcaaagaaggggagagtaacgactctttccaggcatcggcaatattgcgcattaatgcttccacttcttcgactgcggagacatcgttgcgtaaattggcttgcagcaagcg                                       <  1:546090‑M1/236‑235 (MQ=255)                                                                                                                                                                                                                                                                         gCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggcgaaa                                                                                                                                                                                              <  2:80142‑M1/85‑84 (MQ=255)                                                                                                                                                                                                                                                                         gCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggcg                                                                                                                                                                                                 <  2:300036‑M1/82‑81 (MQ=255)                                                                                                                                                                                                                                                                         gCtggcgatgagttcgtcccattgttcttccgttgccaggcgtaacatgagctggcttttttcgacgagttgttgccaggcg                                                                                                                                                                                                 <  2:137836‑M1/82‑81 (MQ=255)                                                                                                                                                                                                                                                                         gCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                              >  1:80143‑M2/1‑79 (MQ=255)                                                                                                                                                                                                                                                                         gCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCg                                                                                                                                                                                         <  1:145608/90‑1 (MQ=255)                                                                                                                                                                                                                                                                          ccTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATgg                                                                                                                                                                                                                    >  2:647716/1‑62 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                GTCAAAAGCGATCAACATCATTGAGAACGGACTGCGGGTGAGTCTTGATGAAGAGAGCAAAGACGAACTAACCCAAAACTTGATTGCTCTTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAA  >  CP009273/1998957‑1999493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.