New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1999222	27 (0.700)	4 (0.110)	4/300	NT	13.2%	coding (29/366 nt)	fliT	putative flagellar synthesis and assembly chaperone
	?	CP009273	= 1999299	27 (0.740)					coding (106/366 nt)	fliT	putative flagellar synthesis and assembly chaperone

TTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAAC  >  CP009273/1999046‑1999550                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                            tttATAGTTATATGGTCAGGCGCTTGATGCCAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATg                                                                                                                                                                                                                                        <  2:488379/275‑1 (MQ=255)        ttttatGGTCAGGCGCTTGCTGCAAGCCAATTTCCCCAACGTTGTCTCCGCAGTCGAAGAAGTTGAAGCATTAATGCTCAATATTGACGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCa                                                                                                                                                                                                                                 <  2:213833/272‑1 (MQ=255)                  aGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCgg                                                                                                                                                                                                                                     >  1:213837/1‑261 (MQ=255)                     cgcTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                                                                           <  1:546090‑M2/236‑3 (MQ=255)                         tgctgcAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                                                                                       >  2:546081‑M2/1‑230 (MQ=255)                                          cGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCa                                                                                                                                                                                                                                                             <  1:264127/213‑1 (MQ=255)                                                                       ggAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGACTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCCTCACCAGCGAAATGGCTTATGTGAATGCGGTGCAGGAGAATGCACATTTGACTGAAGAGTTTGACCCGTCCAACACGATGCAGGAGCAGCACCGcc                                                                                                                                                                   >  1:355957/1‑274 (MQ=255)                                                                           gCNTTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGACCAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                                                                                       >  1:512853‑M2/1‑180 (MQ=255)                                                                                       aaTATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAAGAATGGTACGAACTAATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCACCGCCCGATGCTGCGCCTGAt                                                                                                                                                   >  1:623113/1‑274 (MQ=255)                                                                                                        gAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACAAAAGCaa                                                                                                                                 >  1:406566/1‑275 (MQ=255)                                                                                                                             ttcttTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCa                                                                                                                                                                                                                                                             <  2:370850/130‑1 (MQ=255)                                                                                                                                    aTTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGt                                                                                                                              >  2:610631/1‑250 (MQ=255)                                                                                                                                        aGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAg                                                                                                                          <  1:610640/250‑1 (MQ=255)                                                                                                                                              cAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCa                                                                                                                                                                                                                                                             <  1:120697/113‑1 (MQ=255)                                                                                                                                                    gatgaACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGTCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAACACAGTGAAGCAGCTATAACAGCTTGATATTGATTAAATGGCGGAAc                                                                                     >  2:395867/1‑275 (MQ=255)                                                                                                                                                             tGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcggtc                                                                            >  1:138579/1‑275 (MQ=255)                                                                                                                                                                            tttCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaat                                                                                                                                                                                                                                                      <  2:145607‑M2/90‑8 (MQ=255)                                                                                                                                                                            tttCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                                                                           <  2:80142‑M2/85‑3 (MQ=255)                                                                                                                                                                              tCGCCTGCTAACAACTCGTCGTAAAAAGCCAGCTCATGGTACGCCGGGCAACGGAAGAACAAAGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTAGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCaaaaa                                                           <  1:227200/275‑1 (MQ=255)                                                                                                                                                                               cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                                                                           <  2:300036‑M2/82‑3 (MQ=255)                                                                                                                                                                               cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgc                                                                                                                                                                                                                                                           <  2:137836‑M2/82‑3 (MQ=255)                                                                                                                                                                               cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGaa                                                                                                                                                                                                                                          >  1:217627/1‑99 (MQ=255)                                                                                                                                                                               cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCa                                                                                                                                                                                 >  2:641916/1‑156 (MQ=255)                                                                                                                                                                               cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACACCGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCaaaa                                                            >  1:340526/1‑273 (MQ=255)                                                                                                                                                                               cGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCCGTCATCGGttacata                                                            >  2:104807/1‑267 (MQ=255)                                                                                                                                                                                gccgcgcaaacccTCGTCGACCAAAGCCAGCTCAGGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGCGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATc                                                         <  2:138578/263‑1 (MQ=255)                                                                                                                                                                                gCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                                                                                       >  1:80143‑M2/1‑79 (MQ=255)                                                                                                                                                                                gCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCg                                                                                                                                                                                                                                                  <  1:145608/90‑1 (MQ=255)                                                                                                                                                                                   tGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                                                                                       >  1:300042‑M2/1‑76 (MQ=255)                                                                                                                                                                                   tGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaa                                                                                                                                                                                                                                                       >  1:137837‑M2/1‑76 (MQ=255)                                                                                                                                                                                   tGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCg                                                                                                                                                                                                                                      <  2:217623/99‑1 (MQ=255)                                                                                                                                                                                   tGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGag                                                                                                                                                                             <  1:641925/156‑1 (MQ=255)                                                                                                                                                                                     gCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTAc                                                                                                                >  1:231366/1‑215 (MQ=255)                                                                                                                                                                                     gCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGAAAAGCAGTAATTACAGATTCGGATGGATGAACCGGCGCAACTGGGCGGTCAGTAATCGGTCGAAAAATCAgt                                                      >  2:607928/1‑273 (MQ=255)                                                                                                                                                                                       aacaacTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCNTATGTGAANGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTa                                                  <  1:466262/275‑1 (MQ=255)                                                                                                                                                                                       aacaacTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTAATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTa                                                  <  1:104808/275‑1 (MQ=255)                                                                                                                                                                                         caacTCGTAGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGAt                                                                                                            <  2:231361/215‑1 (MQ=255)                                                                                                                                                                                            cTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTNGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGc                                             <  1:607937/275‑1 (MQ=255)                                                                                                                                                                                               gtcgAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaatataaatgcggtgcatggttcatcagactgggtcctgaatcaaagaaggggagagtaacgactctttccaggcatcggcaatattgcgcattaatgcttcgacttctt                                                                                                                                           <  1:434950‑M2/178‑115 (MQ=255)                                                                                                                                                                                                tcgAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaatataaatgcggtgcatggttcatcagactgggtcctgaatcaaagaaggggagagtaacgactctttccaggcatcggcaatattgcgcattaatgcttcca                                                                                                                                                 <  2:233505‑M2/171‑109 (MQ=255)                                                                                                                                                                                                   aaaaaaGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaatataaatgcggtgcatggttcatcagactgggtcctgaatcaaagaaggggagagtaacgactctttccaggcatcggcaatattgcgcattaatgcttccacttcttcgac                                                                                                                                       >  2:434943‑M2/1‑60 (MQ=255)                                                                                                                                                                                                    aaaaaGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAgcgaaatataaatgcggtgcatggttcatcagactgggtcctgaatcaaagaaggggagagtaacgactctttccaggcatcggcaatattgcgcattaatgcttccacttc                                                                                                                                             >  1:233510‑M2/1‑59 (MQ=255)                                                                                                                                                                                                                     ccacccggtaaaCGCAAGAACAATGTGACGAACTCACCGCCAGCGAAATGGCGTCTGTGAATGCGGGGCAGGAGCTTGAACATTGGATGGAAGAGGGTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCTTGATTCTCGACAACGAAAGCAAGGTAAAGCAGGTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTtgtg                    <  2:705017/265‑1 (MQ=255)                                                                                                                                                                                                                             gCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTcc            >  1:66267/1‑275 (MQ=255)                                                                                                                                                                                                                                        acagggggcanaaCTCATCGCCAGCGGATTGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGGCCCGGCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAAc  <  2:66266/263‑1 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                            TTTATAGCTATATGGTCAGGCGCTTGCTGCAAGCCAATTTACGCAACGATGTCTCCGCAGTCGAAGAAGTGGAAGCATTAATGCGCAATATTGCCGATGCCTGGAAAGAGTCGTTACTCTCCCCTTCTTTGATTCAGGACCCAGTCTGATGAACCATGCACCGCATTTATATTTCGCCTGGCAACAACTCGTCGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAAC  >  CP009273/1999046‑1999550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.