New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2072192 =	32 (0.830)	6 (0.160)	4/300	NT	17.8%	intergenic (‑34/‑35)	yoeD/yoeF	pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
	?	CP009273	2072670 =	25 (0.680)					coding (173/330 nt)	yeeX	UPF0265 family protein

AAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGTTCTCGGATGA  >  CP009273/2071933‑2072433                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                  atctgcagcagctatgagtaatgttggccctaacgaatagcggctgcttaaacgaatccgtctctcacattatcaggggtataaaaatggaaactaccaagccttcattccaggacgtactggaatttgttcgtctgttccgtcgtaataacatactgcaacgcgacattcaggacgttgacaaaaagatccgtaacaaccagaagcgcgtcctgctcctggcaaacacgagcgatcacaacaagccgggagtcagcgatgcagcaaccctggg                                                                                                                                                                                                                                     <  2:166142‑M1/15‑9 (MQ=255)                    aCGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCACTACCgg                                                                                                                                                                                                                 >  1:221340/1‑275 (MQ=255)                            ggTAGGAACAGAAAGATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGTGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTNCAGACGGCAGGTGCCTGCTTTTATGGCCACAAGCAGGAATCGCAGACCTGAAGCAGGAATTAGAGGTAAAAAAGCCCTACCGGGCAATGaa                                                                                                                                                                                                         >  1:537570/1‑275 (MQ=255)                                                                 aaaGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCATGCCACAAGCAGNAATCTCAGNGCTGCAGCAGGAATTAGAGGTAAAAACTCCCTACCGGGCCATAAATCCCCCGGTCATCGGAGTAGTAAcc                                                                                                                                                                                >  1:473950/1‑263 (MQ=255)                                                                        gCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACGAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCa                                                                                                                                                             >  1:449998/1‑275 (MQ=255)                                                                            cAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGccc                                                                                                                                                                                                                       >  1:147797/1‑213 (MQ=255)                                                                             aaCGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGACAACAAGCAGGAAGCTGAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACAGGGCCATGAATCACCCGGCCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGa                                                                                                                                                         >  1:380807/1‑274 (MQ=255)                                                                                ggAGCACCGTATTGACTCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTAcc                                                                                                                                                                                                                   <  2:147796/213‑1 (MQ=255)                                                                                                 cTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATCAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGaaaa                                                                                                                                     >  1:129543/1‑274 (MQ=255)                                                                                                  ttatttatTGTTGGGAACTACGTTCCATGGGAGGAGTTGGTTAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATCAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAg                                                                                                                                    <  1:92856/274‑1 (MQ=255)                                                                                                     tttattGGTGAGAGATACGGTCCAAGGCAGGAGTTCGTCATCACGTTTGGAGGGCCATGCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGc                                                                                                                                                                  <  1:296428/241‑1 (MQ=255)                                                                                                               agaACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAAAATCTTTGGTGAAAAGTTTGGCACGGGaa                                                                                                                       >  2:107791/1‑274 (MQ=255)                                                                                                                                        tgttccgtcgtaagaacaaactgcaacgtgaaattcaggacgttgagaaaaagatccgtgacaaccagaagcgcgtcctgctgctggacaacctgagcgattacatcaagccggggatgagcgtTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAAcc                                                                                                                                                                                <  1:29878‑M1/68‑1 (MQ=255)                                                                                                                                            ccgtcgtaagaacaaactgcaacgtgaaattcaggacgttgagaaaaagatccgtgacaaccagaagcgcgtcctgctgctggacaacctgagcgattacatcaagccggggatgagcgtTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAg                                                                                                                                                                            >  2:29878‑M1/121‑192 (MQ=255)                                                                                                                                              acaggTTGGAGGGGCATTACGGCCGTATGCTCCGAATATGGCGCCGATCCGATTCCGGATAGGTAACGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTg                                                                                        <  2:221335/271‑1 (MQ=255)                                                                                                                                              aacGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTg                                                                                        <  1:107792/273‑1 (MQ=255)                                                                                                                                                 gtaagaacaaactgcaacgtgaaattcaggacgttgagaaaaagatccgtgacaaccagaagcgcgtcctgctgctggacaacctgagcgattacatcaagccggggatgagcgtTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAAcc                                                                                                                                                                                <  1:85201‑M1/68‑1 (MQ=255)                                                                                                                                                   ttGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGccc                                                                                                                                                                                                                       >  2:72850/1‑142 (MQ=255)                                                                                                                                                     gaacaaactgcaacgtgaaattcaggacgttgagaaaaagatccgtgacaaccagaagcgcgtcctgctgctggacaacctgagcgattacatcaagccggggatgagcgtTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAg                                                                                                                                                                            >  2:85200‑M1/112‑183 (MQ=255)                                                                                                                                                       aGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTAcc                                                                                                                                                                                                                   <  1:72851/142‑1 (MQ=255)                                                                                                                                                             aTTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCATATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACAAGTGCAGTTAATAAAAATgg                                                                        >  1:377011/1‑275 (MQ=255)                                                                                                                                                                              gacgttgagaaaaagatccgtgacaaccagaagcgcgtcctgctgctggacaacctgagcgattacatcaagccggggatgagcgtTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAAcc                                                                                                                                                                                <  2:571177‑M1/68‑1 (MQ=255)                                                                                                                                                                                 atatGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAAcc                                                                                                                                                                                >  1:236853/1‑151 (MQ=255)                                                                                                                                                                                  ttgagaaaaagatccgtgacaaccagaagcgcgtcctgctgctggacaacctgagcgattacatcaagccggggatgagcgtTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAg                                                                                                                                                                            >  1:571186‑M1/83‑154 (MQ=255)                                                                                                                                                                                     ggCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAg                                                                                                                                                                            <  2:236848/151‑1 (MQ=255)                                                                                                                                                                                       cgcAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAAt                                                                                                                                                                                                                                        >  1:440543/1‑89 (MQ=255)                                                                                                                                                                                          aGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAAACAGTGCAGTTAATAACAATGGAGATACAGAACTTTTTGCCTTGCTGCATa                                           >  1:124677/1‑275 (MQ=255)                                                                                                                                                                                           gATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTaga                                                                                                                                                                                                                                    <  2:440536/89‑1 (MQ=255)                                                                                                                                                                                                    ccGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACgg                                                                                                                          >  1:704491/1‑186 (MQ=255)                                                                                                                                                                                                       gATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGaa                                                                                                                                                                                                         >  2:151715/1‑104 (MQ=255)                                                                                                                                                                                                        aTCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAg                                                                                                                      <  2:704481/186‑1 (MQ=255)                                                                                                                                                                                                           gATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCAc                                                                                                                                                                                                     <  1:151718/104‑1 (MQ=255)                                                                                                                                                                                                            aTACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAAcc                                                                                            >  1:399745/1‑208 (MQ=255)                                                                                                                                                                                                              aCCGTTCAGACGGCAGGTGCCTGCTAGTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCGTTGGTGACAAGTTGGGTACGGGAAGCTGNAg                                                                                                                >  1:462994/1‑186 (MQ=255)                                                                                                                                                                                                                cGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTg                                                                                        <  2:399738/208‑1 (MQ=255)                                                                                                                                                                                                                  ttCAGGCGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGTTAAAAACGCCCTACCGGTCCATGAATCACCCTGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGCGAAAAGTTGGTTACGGGAAGCTGGAGCGca                                                                                                            <  2:462987/186‑1 (MQ=255)                                                                                                                                                                                                                  ttCAGACGGCGGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTc                   >  1:708815/1‑275 (MQ=255)                                                                                                                                                                                                                       acgtactgtgcgtgcTTTGCTTGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAAGTAGAGGTAAAAACGCCCTACCTGGCCATGAATAACCCCGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATATCAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTg              <  2:124676/268‑1 (MQ=255)                                                                                                                                                                                                                                   tGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGGTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACAAGTGCAGTTAATAACAATGGAGTTACAGAAATTTTTGCCTTGCTGCATACAGAAGAAGGCAGTTGTTAATTTCACTTGGTTCTCggagga  >  1:203770/1‑275 (MQ=255)                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                  AAAAATGAATTCCAAATCCACGGTCTGGGTAGGAACAGAAAAATCTAAGCTCAGAAAACGGATTAAAGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGAACTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAGGGCCATTCCGGCAGTATGCTCAGAATATGGCGCAGATACGCTTCCGGATCGATACCGTTCAGACGGCAGGTGCCTGCTTTTCTGGCAACAAGCAGGAATCTCAGCGCTGAAGCAGGAATTAGAGGTAAAAACGCCCTACCGGGCCATGAATCACCCGGTCATTGGAGTAGTAACCAAAGCAGATTTAGCCAGCATGGAACAAATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGTTCTCGGATGA  >  CP009273/2071933‑2072433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.