New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2072192 =	32 (0.830)	6 (0.160)	4/300	NT	17.8%	intergenic (‑34/‑35)	yoeD/yoeF	pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
	?	CP009273	2072670 =	25 (0.680)					coding (173/330 nt)	yeeX	UPF0265 family protein

TGTTGTTAATTTCGATTGGTTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTTTTTGGAGATATCGCGGCGTTCTTTGGAGAGCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGAT  >  CP009273/2072404‑2072928                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                   tgttgtTAATTTCGATTGGTTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTTTTTGGAGATATCGCGGCGTTCTTTGGAGAGCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATc                                                                                                                                                                                                                                                            >  1:142085/1‑275 (MQ=255)   ttgttAATTTGATTTGGTTCGAGGATGAGAATGATGAAGGGGATAAACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTTTTTGGAGATATCGCGGCGTTCTTTGGAGAGCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATccc                                                                                                                                                                                                                                                          <  2:545296/275‑1 (MQ=255)                                                              aatgagcaatgagGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTTTTTCGAGATATCGCGGCGTTCTTTGGAGAGCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACgg                                                                                                                                                                                                <  1:397175/274‑1 (MQ=255)                                                                                                           gAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTTTTTGGAGATATCGCGGCGTTCTTTGGAGAGCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGTTCATCCCCGGCTTGATGTANTCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTac                                                                                                                                                  >  1:557404/1‑275 (MQ=255)                                                                                                                          gcCGTTTTTCATTTCGCCCATAGCTTTCAGCTTTTTGGAGATATCGCGGCGTTCTTTGGAGAGCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATTCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATAGCTCAGGTTGTCCATCAGCAGGAGGCGCTTCCGGTTGTCACGGATCTTTGTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGTAACataaga                                                                                                                                    >  1:96042/1‑269 (MQ=255)                                                                                                                            cggttttCATTTAGCCCATTTCTTTCAGCTTTTTGGAGATATCGCTGCGTTCTTTGTAGAGCTCGGCATTTTTGATGATGTAATCGTCGACGCGATCTTCATAGTCACCTTTCATGCTGGGGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACa                                                                                                                                 <  2:142084/272‑1 (MQ=255)                                                                                                                                 agactttcgatgttAGCTTTCAGCTGTTTGGGGGTATCGCGGCGTGCTGTGGAGAGCTAGGCATTTTTGATGATGTAATCGTCACCGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAAtt                                                                                                                             <  2:146027/261‑1 (MQ=255)                                                                                                                                            aatagttttaatttttttGGAGATATAGCGGCGTTCTTTTGAGTGATCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCt                                                                                                                 <  2:557395/262‑1 (MQ=255)                                                                                                                                                                                       agCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTTCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTACTGGAATGAAGGCTTGGAAGTTTACATTTTTATACGCCTGAtga                                                                       >  2:165328/1‑272 (MQ=255)                                                                                                                                                                                         cTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAAttt                                                                                                                                                                       >  2:608458/1‑176 (MQ=255)                                                                                                                                                                                             gCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACg                                                                                                                                                                   <  1:608467/176‑1 (MQ=255)                                                                                                                                                                                              cttttttGATGATGTAATCGTCATCGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGagag                                                               <  1:165331/273‑1 (MQ=255)                                                                                                                                                                                                   ctttggttactactccaatgaccgggtgattcatggcccggtagggcgtttttacctctaattcctgcttcaACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCaa                                                                                                                                                                                   >  1:571186‑M2/73‑154 (MQ=255)                                                                                                                                                                                                   ctttggttactactccaatgaccgggtgattcatggcccggtagggcgtttttacctctaattcctgcttcaACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTc                                                                                                                                                      >  2:85200‑M2/73‑183 (MQ=255)                                                                                                                                                                                                   ctttggttactactccaatgaccgggtgattcatggcccggtagggcgtttttacctctaattcctgcttcaACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACgg                                                                                                                                             >  2:29878‑M2/73‑192 (MQ=255)                                                                                                                                                                                                       ggttactactccaatgaccgggtgattcatggcccggtagggcgtttttacctctaattcctgcttcaACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTc                                                                                                                                                                               <  2:571177‑M2/86‑1 (MQ=255)                                                                                                                                                                                                       ggttactactccaatgaccgggtgattcatggcccggtagggcgtttttacctctaattcctgcttcaACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTac                                                                                                                                                  <  1:85201‑M2/115‑1 (MQ=255)                                                                                                                                                                                                       ggttactactccaatgaccgggtgattcatggcccggtagggcgtttttacctctaattcctgcttcaACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACa                                                                                                                                         <  1:29878‑M2/124‑1 (MQ=255)                                                                                                                                                                                                        gatgTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACg                                                                                                                                     >  2:344024/1‑195 (MQ=255)                                                                                                                                                                                                            tAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACa                                                                                                                                 <  1:344030/195‑1 (MQ=255)                                                                                                                                                                                                                      cgcgATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGtt                                                    >  2:294935/1‑262 (MQ=255)                                                                                                                                                                                                                          aTCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAg                                                <  1:294941/262‑1 (MQ=255)                                                                                                                                                                                                                                     cACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGa                                                                                                                                                                                                                                                  >  2:102563/1‑57 (MQ=255)                                                                                                                                                                                                                                      aCCTTTCATGCTGGCGATGATGCCCTGGATTGCTTAAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTCTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGCACCGACGAACAAATTCCAGTCCGTCCTGGAATTAATGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTAGTTTCAGCAACCACTATTCATTAGGGCCAAc                        >  1:166145/1‑274 (MQ=255)                                                                                                                                                                                                                                       ccTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGa                                                                                                              >  2:385826/1‑187 (MQ=255)                                                                                                                                                                                                                                         tttCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTa                                                                                                                                                                                                                                              <  1:102564/57‑1 (MQ=255)                                                                                                                                                                                                                                           tCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGa                                                                                                          <  1:385832/187‑1 (MQ=255)                                                                                                                                                                                                                                              tGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCtt                                                                                                                                                                                                             >  1:588121/1‑85 (MQ=255)                                                                                                                                                                                                                                                  ggCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTgg                                                                                                                                                                                                         <  2:588112/85‑1 (MQ=255)                                                                                                                                                                                                                                                     gatgatGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTa                                                                                                                       >  1:513087/1‑164 (MQ=255)                                                                                                                                                                                                                                                         atgCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTc                                                                                                                   <  2:513080/164‑1 (MQ=255)                                                                                                                                                                                                                                                            cccagggttgctgcaTCGCTGACTCCCGGCTTGTTGTGATCGCTCGTGTTTGCCAGGAGCAGGACGCGCTTCTGGTTGTTACGGATCTTTTTGTCAACGTCCTGAATGTCGCGTTGCAGTATGTTATTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGACGGATTCGTTTAAGCAGCCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCTGCAGAt  <  2:166142‑M2/259‑1 (MQ=255)                                                                                                                                                                                                                                                                           aCGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCcagcagc                                                                                                                                                                                                                        >  1:663304/1‑45 (MQ=255)                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                   TGTTGTTAATTTCGATTGGTTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTTTTTGGAGATATCGCGGCGTTCTTTGGAGAGCTCGGCATTTTTGATGATGTAATCGTCAACGCGATCTTCATAGTCACCTTTCATGCTGGCGATGATGCCCTGGATTGCTTCAACGCTCATCCCCGGCTTGATGTAATCGCTCAGGTTGTCCAGCAGCAGGACGCGCTTCTGGTTGTCACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGAT  >  CP009273/2072404‑2072928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.