New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2204247 =	30 (0.780)	6 (0.170)	4/294	NT	17.1%	pseudogene (1669/2001 nt)	yehQ	pseudogene
	?	CP009273	2204513 =	30 (0.830)					pseudogene (1935/2001 nt)	yehQ	pseudogene

AACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGC  >  CP009273/2203983‑2204506                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                    aaattatttgtTGGGCCGGTGGTTGCGTGTGTTTCGCTTGGTGGGGACGTCGGCCGCCGTGCGCTGTATGCGAGTGTCATGATCGGCGAAGGGGAAGATAATGGTCTGACGTTAGCATTACCAGCCTCAGCCATCGCACCTTATG‑CCGGTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCt                                                                                                                                                                                                                                                            <  2:601724/271‑1 (MQ=255)      atttattCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGGTTCTGGCTTTGTCAGTTTTGTTGCAGGGCAATTGATACTGGAACCACGGGTGATGATGACAAAAACCCATACCTGGgcgc                                                                                                                                                                                                                                                      >  1:137241/1‑275 (MQ=255)              tGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGNTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGt                                                                                                                                                                                                                                                                >  1:601733/1‑257 (MQ=255)              tGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCTTGGGCGCTGGACGCa                                                                                                                                                                                                                                              >  1:315682/1‑275 (MQ=255)                ccGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGACGGTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGCGATGATGACAACATCCCGTTCCTGGGCGCTGGACgaacc                                                                                                                                                                                                                                            >  2:325273/1‑271 (MQ=255)                                      tCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTTACACTGGAACCACGGGTGATCATGCAAAAAAACCGTGCCGGGGCGCGGGAGTCAGAAACAACGCCtctttcacccctt                                                                                                                                                                                                                      >  2:592433/1‑263 (MQ=255)                                                            gACGCTGGTTGCGCAGGTCATTAGCGGCGAAGGTGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCTCACCTTATG‑CCGTTGAACGCATGGCGGCGCTGTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCt                                                                                                                                                                                                 <  1:592442/274‑1 (MQ=255)                                                                       cgcAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGAAGTTATCATTACCAGCCTCAGCCAGCGCACCTTATGCCCGTTGGACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTgg                                                                                                                                                                                                                              <  1:693463/235‑1 (MQ=255)                                                                                      gcgAAGGGGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCACCTGCTCAGCCGttcgct                                                                                                                                                                      >  2:79311/1‑271 (MQ=255)                                                                                                        tgCTTACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGtt                                                                                                                                                     <  1:325279/274‑1 (MQ=255)                                                                                                        tgCTTACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGtt                                                                                                                                                     <  1:79312/274‑1 (MQ=255)                                                                                                          cTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGGTGATGACAAANACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCCCATCAGTTGCTGATACGCTGCCAAGCGTTACt                                                                                                                                                  >  1:669413/1‑275 (MQ=255)                                                                                                           tGACGTTATCATTACCCGCCTCAGCCAGAGCACCTTATG‑CCGTGAAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGNAACTACGCCTGTGGCACCGCTACCTTc                                                                                                                                                                                                                 >  1:524293/1‑211 (MQ=255)                                                                                                               gTTATCATTACCATCCTCAGCCAGCGCACCGTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAACCGGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTAATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGcc                                                                                                                                                                                                             <  2:524286/211‑1 (MQ=255)                                                                                                                           aGCCTCAGCCAGCGCACCTGATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTg                                                                                                                                                                      <  1:355357/238‑1 (MQ=255)                                                                                                                             ccTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGAAACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGAGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTCCTGCTCATCAGTTGCTGATACGGTGCCAGGCGGTACTTATTCACCtcacatctat                                                                                                                                >  2:102783/1‑265 (MQ=255)                                                                                                                             ccTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAG‑TTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAACACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTCCCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGATGCCAGGCGGTCCTTATACAAATGCTCCacacag                                                                                                                              >  1:458661/1‑270 (MQ=255)                                                                                                                                     agcGCACCGTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGGTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGGGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGgcg                                                                                                                       <  1:591804/275‑1 (MQ=255)                                                                                                                                                   ccGTTGAACGCATGGCGGCGCTTTTGAAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCTTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGaa                                                                                                             <  2:315676/272‑1 (MQ=255)                                                                                                                                                     gTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTAc                                                                                                                                                                                      >  2:167728/1‑197 (MQ=255)                                                                                                                                                         aaCGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCt                                                                                                                                                                                  <  1:167731/197‑1 (MQ=255)                                                                                                                                                              aTGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCt                                                                                                                           >  2:587325/1‑247 (MQ=255)                                                                                                                                                                  cggcgCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGgcg                                                                                                                       <  1:587334/247‑1 (MQ=255)                                                                                                                                                                   ggcgCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCCACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAgg                                                                                          >  1:31777/1‑275 (MQ=255)                                                                                                                                                                                                         atccttgttgctgaagcatggggaataattgttcgcaaagcaaaacaccgttattcattgcttctACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTg                                                                                                <  2:605400‑M1/166‑1 (MQ=255)                                                                                                                                                                                                          tccttgttgctgaagcatggggaataattgttcgcaaagcaaaacaccgttattcattgcttctACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCtt                                                                                                                                                                                                                  <  2:132032‑M1/52‑1 (MQ=255)                                                                                                                                                                                                          tccttgttgctgaagcatggggaataattgttcgcaaagcaaaacaccgttattcattgcttctACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCtt                                                                                                                                                                                                                  <  2:232759‑M1/52‑1 (MQ=255)                                                                                                                                                                                                             ttgttgctgaagcatggggaataattgttcgcaaagcaaaacaccgttattcattgcttctACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCa                                                                                            >  1:605409‑M1/62‑231 (MQ=255)                                                                                                                                                                                                              tgttgctgaagcatggggaataattgttcgcaaagcaaaacaccgttattcattgcttctACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGc                                                                                                                                                                                                              >  1:232764‑M1/61‑116 (MQ=255)                                                                                                                                                                                                              tgttgctgaagcatggggaataattgttcgcaaagcaaaacaccgttattcattgcttctACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGc                                                                                                                                                                                                              >  1:132033‑M1/61‑116 (MQ=255)                                                                                                                                                                                                                                    ggCAATTGACAATGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTGCTGCCAGTGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACaa                         <  1:358916/275‑1 (MQ=255)                                                                                                                                                                                                                                        aTTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCt                                                                                                                           >  1:459989/1‑173 (MQ=255)                                                                                                                                                                                                                                            acacTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGgcg                                                                                                                       <  2:459982/173‑1 (MQ=255)                                                                                                                                                                                                                                                        cGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCg                                                                                                                                                                                           >  2:110682/1‑93 (MQ=255)                                                                                                                                                                                                                                                           gTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGc  <  1:102784/275‑1 (MQ=255)                                                                                                                                                                                                                                                            tgatgatgaCAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTa                                                                                                                                                                                       <  1:110683/93‑1 (MQ=255)                                                                                                                                                                                                                                                                        aaaCCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGc                                                                                                                                                                                                   >  1:203426/1‑69 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                    AACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGAAGATAATGTGCTGACGTTATCATTACCAGCCTCAGCCAGCGCACCTTATG‑CCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTGGTTTCTGGCTTTGTCAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGC  >  CP009273/2203983‑2204506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.