New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2204247 =	30 (0.780)	6 (0.170)	4/294	NT	17.1%	pseudogene (1669/2001 nt)	yehQ	pseudogene
	?	CP009273	2204513 =	30 (0.830)					pseudogene (1935/2001 nt)	yehQ	pseudogene

CGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCG  >  CP009273/2204290‑2204773                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                     cGCTACCTTCAGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGGTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGCCGAATGACCTCACCGCGGTGGGTTTTTCTCGGCTGGCACATGTGTTGGGACAATGTCGTAATACCGAAAGCGAGGAAAGGGAAGAAGAAATGAATAACGGTGTTTTGCTATGCGAACAATTATTCCCCATGCtt                                                                                                                                                                                                                   >  1:699814/1‑275 (MQ=255)                                                      tgaccaatagcactctgttcctgatagcgccagccgttatggagcagttgaataagtaacgcctggcagcgtatcagcaactgatgagcagtagacggcacaggcaaaacgctggcagaaggtagcggtgccacaggcgtagtttctgcgtccagcgcccaggcacgggtAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGcaacaa                                                                                                                                                                                                          >  1:605409‑M2/171‑231 (MQ=255)                                                          caatagcactctgttcctgatagcgccagccgttatggagcagttgaataagtaacgcctggcagcgtatcagcaactgatgagcagtagacggcacaggcaaaacgctggcagaaggtagcggtgccacaggcgtagtttctgcgtccagcgcccaggcacgggtAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGAt                                                                                                                                                                                                      <  2:605400‑M2/65‑1 (MQ=255)                                                             gCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGAACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCACCATGCTTAAGTAAAAAGGATGAAAAAGTGCTTTTTATGAAGAGTTCTACTCCAGTTCNGGACTGcct                                                                                                                                                       >  2:279193/1‑273 (MQ=255)                                                                             tCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCACCATGCTTCAGCAACAAGGATTAAATAGTGCTTTTTANTTAGAGTTCAACTCCAGTTCCTTACTTCGCACGCTACTATAtttt                                                                                                                                        >  2:448135/1‑272 (MQ=255)                                                                                 ttGCTCCATACCGGCTGGCGCTATCAGGAACAGAGTGTTATTGTTAAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACACGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGc                                                                                                                                      <  1:448142/271‑1 (MQ=255)                                                                                 cTGCTCCATAACGGCTGGCGCTTTCAGGAACAGAGTGCTATTGGTGAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTGTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGc                                                                                                                                      <  1:279198/272‑1 (MQ=255)                                                                                                                  agTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgctttg                                                                                                                                                                                                                                         >  1:326334/1‑140 (MQ=255)                                                                                                                  agTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTc                                                                                                                                                                                                                            >  2:453020/1‑153 (MQ=255)                                                                                                                  agTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAg                                                                                                                                                                                                                >  1:74226/1‑165 (MQ=255)                                                                                                                  agTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCt                                                                                                                                                                           >  1:606070/1‑202 (MQ=255)                                                                                                                      cTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGaa                                                                                                                                                                                                                                     <  2:326328/140‑1 (MQ=255)                                                                                                                      cTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCa                                                                                                                                                                                                                        <  1:453027/153‑1 (MQ=255)                                                                                                                      cTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGcaac                                                                                                                                                                                                            <  2:74225/165‑1 (MQ=255)                                                                                                                      cTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTc                                                                                                                                                                       <  2:606061/202‑1 (MQ=255)                                                                                                                         ttGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCt                                                                                                                                                                           >  1:309261/1‑195 (MQ=255)                                                                                                                             tCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTc                                                                                                                                                                       <  2:309255/195‑1 (MQ=255)                                                                                                                              cAGGCATAGTGGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCGGTTCCGGACTGCTCACGCCACGGTATTAGGCa                                                                                                                                     >  1:708439/1‑228 (MQ=255)                                                                                                                                  cATAGTTGCTGGCGAATTACCTCACCGCGGTGGGTTTTTATCGGCTGGAACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATc                                                                                                                                 <  2:708429/228‑1 (MQ=255)                                                                                                                                                 aTGACCTCGCCGCGTGGGGTTTGTATCGGCTTCGACTTGTGTTGGGACAATTTCGTAATACTGAAAGCGAGGTCCGGGTCGAAGCAATTAATAACGGTGTGTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGATTTCTACTCCAGTTCCTGACTGCTCACGCAACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGa                                                                    <  2:669404/274‑1 (MQ=255)                                                                                                                                                                        gcagaaggtagcggtgccacaggcgtagtttctgcgtccagcgcccaggcacgggtAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGcaaca                                                                                                                                                                                                           >  1:232764‑M2/57‑116 (MQ=255)                                                                                                                                                                        gcagaaggtagcggtgccacaggcgtagtttctgcgtccagcgcccaggcacgggtAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGcaaca                                                                                                                                                                                                           >  1:132033‑M2/57‑116 (MQ=255)                                                                                                                                                                            aaggtagcggtgccacaggcgtagtttctgcgtccagcgcccaggcacgggtAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGa                                                                                                                                                                                                       <  2:132032‑M2/64‑1 (MQ=255)                                                                                                                                                                            aaggtagcggtgccacaggcgtagtttctgcgtccagcgcccaggcacgggtAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGa                                                                                                                                                                                                       <  2:232759‑M2/64‑1 (MQ=255)                                                                                                                                                                                           tGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAGGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGt                                                                                                           >  1:541653/1‑193 (MQ=255)                                                                                                                                                                                           tGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCa                                                                                                                                                      >  1:434859/1‑150 (MQ=255)                                                                                                                                                                                           tGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCa                                                                                                                                                      >  1:439692/1‑150 (MQ=255)                                                                                                                                                                                           tGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTAtt                                                                                                                                          >  2:209059/1‑162 (MQ=255)                                                                                                                                                                                            gggACAATTTCGTAATACAGAAAGCGAGGCACGGGTa                                                                                                                                                                                                                                                                      >  1:365948/1‑37 (MQ=255)                                                                                                                                                                                               aCAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAGGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGTCAcc                                                                                                       <  2:541644/193‑1 (MQ=255)                                                                                                                                                                                               aCAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGcc                                                                                                                                                  <  2:434852/150‑1 (MQ=255)                                                                                                                                                                                               aCAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGcc                                                                                                                                                  <  2:439685/150‑1 (MQ=255)                                                                                                                                                                                               aCAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGc                                                                                                                                      <  1:209063/162‑1 (MQ=255)                                                                                                                                                                                                cAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAg                                                                                                                                                                                                                                                                  <  2:365942/37‑1 (MQ=255)                                                                                                                                                                                                    ttCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCt                                                                                                                                                        >  1:259011/1‑139 (MQ=255)                                                                                                                                                                                                        tAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACg                                                                                                                                                    <  2:259006/139‑1 (MQ=255)                                                                                                                                                                                                             cAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCAt                                                                                                                                                                                                                       >  1:604814/1‑67 (MQ=255)                                                                                                                                                                                                             cAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAg                                                                                                                                                                                                                >  2:656204/1‑74 (MQ=255)                                                                                                                                                                                                                 aaGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCtt                                                                                                                                                                                                                   <  2:604805/67‑1 (MQ=255)                                                                                                                                                                                                                 aaGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGcaac                                                                                                                                                                                                            <  1:656213/74‑1 (MQ=255)                                                                                                                                                                                                                  aGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCg  >  2:219811/1‑275 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                     CGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCG  >  CP009273/2204290‑2204773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.