New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2471834	30 (0.780)	5 (0.140)	5/292	NT	16.2%	coding (509/1338 nt)	dsdX	D‑serine transporter
	?	CP009273	= 2472115	24 (0.670)					coding (790/1338 nt)	dsdX	D‑serine transporter

ACACTTCAACGCTGCCGCTGGCTTTCAGTTGATGTCATTATGGTGCTGGTTGGCCTGATTTGTGGCATCACGCTGTTTGTTGAAGTGGGCGTCGTGCTATTGATTCCTCTGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTT  >  CP009273/2471599‑2472107                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                  acacTTCAACGCTGCCGCTGGCTTTCAGTTGATGTCATTATGGTGCTGGTTGGCCTGATTTGTGGCATCACGCTGTTTCTTGAAGTGGGCGTCGTGCTATTGATTCCTCTGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGTTTCCTCCACATCCGGCTGCTTTATTGGTTGCCAATACGCTGGGCGGCGATATCGGTTCGGTGATCGTCTGCGGttg                                                                                                                                                                                                                                            >  2:5790/1‑274 (MQ=255)                              tGATGTCATTATGGTGCTGGTTGGCCTGATTTGTGGCATCACGCTGTTTGTTGAAGTGGGCGTCGTGCTATTGATTCCTCTGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCg                                                                                                                                                                                                               <  1:317796/275‑1 (MQ=255)                                              cTGGTTGGCCTGATTTGTGGCATCACGCTGTTTGATGAAGTGGGCGTCGTGCTATTGATTCCTCTGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTNCCAATAAGNTGGGCGCAGATATCGGTTCGGGGATCGTCTACGGTTTGCTGGTTGGGCAGATGGCATCATTGAGCGGTGGCCACCTTTTct                                                                                                                                                                                                >  1:467778/1‑273 (MQ=255)                                                  ttGGCCTGATTTGTGGCATCACGNTGTTTGTTGAAGTGTGCGTCGTGCTATTGATTCCTCTGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTCGGCGCAGATAtcggtt                                                                                                                                                                                                                                                               <  1:535046/207‑1 (MQ=255)                                                                                ttgAAGTTGGCGTCGTGCTATTGATTCCTCTGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATNTACCGCATTGATGGCAGTGTACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAAcc                                                                                                                                                              <  1:551546/274‑1 (MQ=255)                                                                                     gTGGGCGTCGTGCTATTGATTCCTCTGGCNTTTTCAATTGCCAAAAAAACCAATACCTCATTATCAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAactcaaccaagatatacaaaccactctcacgcgccatgttcaattcggcaatcgttttaac                                                                                                                                                                                                                      <  1:485504‑M1/213‑62 (MQ=255)                                                                                                    ttGTTTCCTATGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGTTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAATCCTGTACCCACAGAGTTTGCAg                                                                                                                                          <  1:334024/274‑1 (MQ=255)                                                                                                         tCCTCTGGCTTTTTCAATTGCC‑AAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGCGTTTGCAGATCTCaa                                                                                                                                   >  1:183592/1‑275 (MQ=255)                                                                                                              tGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATAtcggttc                                                                                                                                                                                                                                                              >  2:288151/1‑148 (MQ=255)                                                                                                                  tttttCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTg                                                                                                                                                                                                                                                          <  1:288156/148‑1 (MQ=255)                                                                                                                                             cTCATTATTAAGGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGgcg                                                                                                <  1:5790/275‑1 (MQ=255)                                                                                                                                                            tGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGc                                                                                                                                                                                                                                 >  1:126758/1‑131 (MQ=255)                                                                                                                                                                aTTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGAt                                                                                                                                                                                                                             <  2:126757/131‑1 (MQ=255)                                                                                                                                                                         tGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGt                                                                                                         >  1:7955/1‑238 (MQ=255)                                                                                                                                                                           tACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTCCAGATCTCAAAGTTCGCGATGAAAAAACCACACCGTCATTAGTCTACACGTTATTCACCATACTGCTACCCCttc                                                                  >  2:678292/1‑274 (MQ=255)                                                                                                                                                                                cATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAactcaaccaagatatacaaaccactctcacgcgccatattcaattc                                                                                                                                                                                                                                     >  2:108263‑M1/1‑61 (MQ=255)                                                                                                                                                                                cATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACgg                                                                                                                                                                                                                                               >  2:338787/1‑97 (MQ=255)                                                                                                                                                                                cATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTACTACCCATTGCGCTg                                                             >  1:89792/1‑275 (MQ=255)                                                                                                                                                                                  ttGATGGCAGTGCACTGCGTGGTTCCTCCANATCCGGCTNTTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGACTTTGCAGATCTCAAAGTTCGCGATGAAAAAacac                                                                                                               <  1:481518/223‑1 (MQ=255)                                                                                                                                                                                   tGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATc                                                                                                                                                                                                                >  1:143972/1‑125 (MQ=255)                                                                                                                                                                                    gATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAactcaaccaagatatacaaaccactctcacgcgccatattcaattcggca                                                                                                                                                                                                                                 <  1:108264‑M1/107‑51 (MQ=255)                                                                                                                                                                                    gATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTg                                                                                                                                                                                                                                           <  1:338793/97‑1 (MQ=255)                                                                                                                                                                                       ggCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTg                                                                                                                                                                                                            <  2:143971/125‑1 (MQ=255)                                                                                                                                                                                                      ggTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGt                                                                                                                                                                                                                                      >  1:450280/1‑84 (MQ=255)                                                                                                                                                                                                      ggTTCCTCCACATCCGGCTGCGTTATATGTTGCCAATAAactcaaccaagatatacaaaccactctcacgcgccatattcaattcggcaatcgttttaacca                                                                                                                                                                                                                    >  1:493881‑M1/1‑39 (MQ=255)                                                                                                                                                                                                       gTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGTGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCa                                                                                 <  1:60283/232‑1 (MQ=255)                                                                                                                                                                                                          cctccACATCCGGCTGCTTTATATGTTGCCAATAAactcaaccaagatatacaaaccactctcacgcgccatattcaattcggcaatcgttttaaccaacat                                                                                                                                                                                                                <  2:493874‑M1/102‑68 (MQ=255)                                                                                                                                                                                                          cctccACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTggg                                                                                                                                                                                                                                  <  2:450273/84‑1 (MQ=255)                                                                                                                                                                                                           ctccACATCCGGCTGCTTTATATGTTGCCAATAAGCTg                                                                                                                                                                                                                                                                               >  1:412169/1‑38 (MQ=255)                                                                                                                                                                                                             ccACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCg                                                                                                                                                                                                               >  1:42510/1‑100 (MQ=255)                                                                                                                                                                                                               acaTCCGGCTGCTTTATATGTTGCCAATAAGATGGgcg                                                                                                                                                                                                                                                                           <  2:412162/38‑1 (MQ=255)                                                                                                                                                                                                                 aTCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTgg                                                                                                                                                                                                           <  2:42510/100‑1 (MQ=255)                                                                                                                                                                                                                            ttATGTGTTGCCAATTAGCTGGGCGCAGATGTCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTgaga                  <  1:60136/274‑1 (MQ=255)                                                                                                                                                                                                                                    tGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTg                                                                                                                                                                                                                               >  2:360110/1‑61 (MQ=255)                                                                                                                                                                                                                                    tGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCATAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACg                                                                                           >  1:643039/1‑193 (MQ=255)                                                                                                                                                                                                                                     gCCAATAAactcaaccaagatatacaaaccactctcacgcgccatattcaattcggcaatcgttttaaccaacatcag                                                                                                                                                                                                             >  2:422762‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                                      ccgatgaGCTGGGGGCAGGTATAGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATTGCATCACTGATCTGTGGCCCACTTGTCCTTAAATTTCTGGGTCCACGACTGCCCTTTAAACCTGTACCCACAGAGGTTGCAGATCTCAAATTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGGTGGTTAAAACGATTGCAGAATTGAATATGGCGCGTGAGAGTGGGTTGta        <  2:183589/268‑1 (MQ=255)                                                                                                                                                                                                                                      ccAATAAGCTGGGCGCAGATATCGGTTCGGCGAGCGCCTACGGCTTGCCGGTTGGGCTGATGGCATCACTGATCGGTGGCCCAATTTTCCTTCAATTTCTGGGTCAACGACTGCCCGTGAAACTTGTACCCACAGAGTTTGCAGATCGCACAGGGCTCGATGAAGAAACACTACCGCCATTAGGCGCCCCGATATTCAGCATACTGATACCAATACAGCAGATATTGGTTAAAAAGATTACCGAATTGACTATGTCGAGTgatncggggtagtc        >  2:60135/1‑262 (MQ=255)                                                                                                                                                                                                                                        aaTAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATgg                                                                                                                                                                                                                           <  1:360116/61‑1 (MQ=255)                                                                                                                                                                                                                                        aaTAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTAt                                                                                       <  2:643030/193‑1 (MQ=255)                                                                                                                                                                                                                                         aTAAactcaaccaagatatacaaaccactctcacgctccatattcaattcggcaatcgttttaaccaacatcagcgcaatgggtagcagtatggtgaataacgatgcgcctaatgacggtagtgttttttcatcgcgaactttgagatctgcaaactctgtgggtacaggtttaaagggcagtcgttgacccagaaatttaaggaaaagtgggccaccgatcagtgatgccatcagcccaaccagcaaaccgtagacgatcaccgaaccgatat     <  1:440433‑M1/274‑271 (MQ=255)                                                                                                                                                                                                                                         aTAAactcaaccaagatatacaaaccactctcacgcgccatattcaattcggcaatcgttttaaccaacatcagcgcactgggtagcagtatggtgaataacgttgcgcctaatgacggtagtgttttttcatcgcgaactttgagatctgcaaactctgtgggtacaggtttaaagggcagtcgttgacccagaaatttaaggaaaagtgggccaccgatcagtgatgccatcagcccaaccagcaaaccgtagacgatcaccgaaccgatat     <  1:685938‑M1/274‑271 (MQ=255)                                                                                                                                                                                                                                         aTAAactcaaccaagatatacaaaccactctcacgcgccatattcaattcggcaatcgttttaaccaacatcagcgca                                                                                                                                                                                                         <  1:422769‑M1/78‑75 (MQ=255)                                                                                                                                                                                                                                         aTAAGCTGGGCGCAGATATCGGTTCGGTGTTCGTCTACGGTTTGTTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTatat     <  1:588281/274‑1 (MQ=255)                                                                                                                                                                                                                                         aTAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGAc                                                                                                                                                                           >  2:109802/1‑108 (MQ=255)                                                                                                                                                                                                                                           aaactcaaccaagatatacaaaccactctcacgcgccatattcaattgggcaatcgttttaaccaacatcagcgcaatgggtagcagtatggtgaataacgttgcgcctaatgacggtagtgttttttcatcgcgaactttgagatctgcaatctctgtgggtacaggtttaaagggcagtcgttgacccagaaagttaaggaaaagtgggccaccgatcagtgatgccatcagcccaaccagcaaaccgtagacgatcaccgaaccaaaaacta  >  1:678301‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                  ACACTTCAACGCTGCCGCTGGCTTTCAGTTGATGTCATTATGGTGCTGGTTGGCCTGATTTGTGGCATCACGCTGTTTGTTGAAGTGGGCGTCGTGCTATTGATTCCTCTGGCTTTTTCAATTGCCAAAAAAACCAATACCTCATTATTAAAGCTTGCCATTCCGCTATGTACCGCATTGATGGCAGTGCACTGCGTGGTTCCTCCACATCCGGCTGCTTTATATGTTGCCAATAAGCTGGGCGCAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTT  >  CP009273/2471599‑2472107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.