New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2471834	30 (0.780)	5 (0.140)	5/292	NT	16.2%	coding (509/1338 nt)	dsdX	D‑serine transporter
	?	CP009273	= 2472115	24 (0.670)					coding (790/1338 nt)	dsdX	D‑serine transporter

CAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCATATGAGCATGGGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTATTGCTAATATTTTGCTGATTATCGGGGCCGGAGGCGCATTCAACGCCATTTTAAAAAGCAGCAGTCTCGCTGATACGCTGGCAGTTATTCTCTCCAATATGCATATGCACCCGATTCTTCTGGCCTGGTTAGT  >  CP009273/2471843‑2472371                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                 tagtttttggttcggtgatcgtctACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAACTTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGATTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCCAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTtt                                                                                                                                                                                                                                                                >  1:678301‑M2/9‑273 (MQ=255)    atatCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCATCGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGAGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttat                                                                                                                                                                                                                                                              <  1:440433‑M2/274‑5 (MQ=255)    atatCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCAGTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttat                                                                                                                                                                                                                                                              <  1:685938‑M2/274‑5 (MQ=255)                                                   tCACTTGTCGGAGGCCCACATTTCCTTAAATTTCTGGGTCAACGACTGCGCTTAAAACCTGTACATATAGAGTTTGGAGGTCTGAAAGTGCGCGATGAAAAAACACTATCACCATTAGTCGCAACGTTATTCACCATACTGCTACCCATCGCGCTGATGTTGGTTAAAAAGCTTGCCGAATTGAATATGTCGCGTGAGCGAGGTTGGTATATCTAGATCGAGTTTAGTGTGAACCCTATAACTGCCATTGGTAACTCAGTGTTTGtgtttttttc                                                                                                                                                                                                              >  2:247979/1‑266 (MQ=255)                                                           aggttggcctcTTTTCCTTAAATTTCTGGGTCAAAGGCTGCCCTTTAAACCTGTACCCACAGAGTTTGAAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGtt                                                                                                                                                                                                        <  2:89791/263‑1 (MQ=255)                                                                   aaagtttCCTTCGCTTTCTGTTTCAACTATTGACCTGTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACAATACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGc                                                                                                                                                                                              <  2:149035/271‑1 (MQ=255)                                                                                                                             tGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGAGCTGATGTTGGTTAAAACGATTGCCGATTTGAATATGGCGCGTGAGAGTGGGTAGTAACTCTTGGTTGTGTTTATTGGCAACCCTATCACTGCCATGTTTATCTCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAACATCTGAGCATGGGTACGATGCTCACACAGACGGCAACTGACGTCTGCTCTAt                                                                                                                                      >  2:155196/1‑273 (MQ=255)                                                                                                                                 gATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCATATGAGCATGGGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTAt                                                                                                                                      <  1:155199/269‑1 (MQ=255)                                                                                                                                   tctcAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATAc                                                                                                                                                                                                >  1:516080/1‑209 (MQ=255)                                                                                                                                   tctcAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGGTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCAATGTTTATCGCCGGGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCATATGAGCATGGGGACGATGCTCCAACAGACGGAAAATGGCTTCGtttattttttttt                                                                                                                                >  2:573651/1‑263 (MQ=255)                                                                                                                                       aaaGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCa                                                                                                                                                                                            <  2:516073/209‑1 (MQ=255)                                                                                                                                                                    aTTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAg                                                                                                                                                                                           >  1:654378/1‑181 (MQ=255)                                                                                                                                                                        ggCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCata                                                                                                                                                                                       <  2:654369/181‑1 (MQ=255)                                                                                                                                                                                                        tGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttat                                                                                                                                                                                                                                                              <  1:422769‑M2/78‑5 (MQ=255)                                                                                                                                                                                                            cTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttattggc                                                                                                                                                                                                                                                          >  2:422762‑M2/1‑70 (MQ=255)                                                                                                                                                                                                               aTGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttattggcaacatataaagcagccggatgtggagg                                                                                                                                                                                                                               <  2:493874‑M2/102‑36 (MQ=255)                                                                                                                                                                                                                   tGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttattggcaacatataacgcagccggatgtggaggaacc                                                                                                                                                                                                                           >  1:493881‑M2/1‑63 (MQ=255)                                                                                                                                                                                                                    ggTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGc                                                                                                                                                                                          >  1:330388/1‑134 (MQ=255)                                                                                                                                                                                                                     gTTAAAACGATTGCCGAATTGAACATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttattggcaacatataaagcagccggatgtggaggaaccacgcagtgcactgccatcaatgcggtacatagcggaatggcaagctttgataatgaggtattggtttttttggcaattgaaaangccagaggaatcaatagcacgacgcccac                                                                                                          <  1:485504‑M2/213‑153 (MQ=255)                                                                                                                                                                                                                        aaaaCGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCatat                                                                                                                                                                                      <  2:330382/134‑1 (MQ=255)                                                                                                                                                                                                                         aaaCGATTGCCGAATTGAATATGGCGCGTGAGCGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCATATGAGCATGGGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTATTGCTAATATTTTGCTGATTATCGGGGCCGGAGGCGCATTCAACGCCATTTTa                                                                                  >  1:144815/1‑233 (MQ=255)                                                                                                                                                                                                                             gATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCATATGAGCATGGGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTATTGCTAATATTTTGCTGATTATCGGGGCCGGAGGCGCATTCAACGCCATTTTaaaaa                                                                              <  2:144814/233‑1 (MQ=255)                                                                                                                                                                                                                              aTTGCCGAATTGAATATGGTGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGAATATGAGCATGGGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTATTGCTAATATTTTGCTGATTATCGGGGCCGGAGGCGCATTCAACGCCATTTTAAAAAGCAGCAGTCTCGCTGATACGCTGGCAGTTATTCTCTCCAata                                    <  1:573660/274‑1 (MQ=255)                                                                                                                                                                                                                                tGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttattggcaacatataaagcagccggatgtggaggaaccacgcagtgcactgccatc                                                                                                                                                                                                         <  1:108264‑M2/107‑58 (MQ=255)                                                                                                                                                                                                                                    gAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTttattggcaacatataaagcagccggatgtggaggaaccacgcagtgcactgccatcaatg                                                                                                                                                                                                     >  2:108263‑M2/1‑46 (MQ=255)                                                                                                                                                                                                                                                    gTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTg                                                                                                                                                                                                                        >  2:519082/1‑72 (MQ=255)                                                                                                                                                                                                                                                    gTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTg                                                                                                                                                                                                                        >  2:554455/1‑72 (MQ=255)                                                                                                                                                                                                                                                        gagTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGc                                                                                                                                                                                                                    <  1:554464/72‑1 (MQ=255)                                                                                                                                                                                                                                                        gagTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGc                                                                                                                                                                                                                    <  1:519089/72‑1 (MQ=255)                                                                                                                                                                                                                                                                ttttttttttGGTTGTGTTTATTGTCCTCCCTATTGCGGCCATGTTTATCGCCGTGTTTGTCGCCTTGTATGTGTTGGGTATACGCCAGCATATGAGCATGTGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTATTGCTAATATTTTGCTGATTATCGGGGCCGGAGGCGCATTCAACGCCATTTTAAAAAGCAGCAGTCTCGCTGATACGCTGGCAGTTATTCTCTCCAATATGCATATGCACCCGATTCTTCTGGCCTGGTTAGt  <  1:247984/266‑1 (MQ=255)                                                                                                                                                                                                                                                                       cTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTAtgtg                                                                                                                                                                                                          >  1:312428/1‑67 (MQ=255)                                                                                                                                                                                                                                                                       cTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCATATGAGCATGGGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTATTGCTAATATTTTGCTGATTATCGGGGCCGGAGGCGCATTCAACGCCATTTTAAAAAGCAGCAGTCTCGCTGATACGCTGGCAGTTATtctct                                          >  1:253619/1‑227 (MQ=255)                                                                                                                                                                                                                                                                           gTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTgg                                                                                                                                                                                                      <  2:312422/67‑1 (MQ=255)                                                                                                                                                                                                                                                                            ttGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCtattat                                                                                                                                                                                                             >  1:235941/1‑59 (MQ=255)                                                                                                                                                                                                                                                                                gTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATgtgt                                                                                                                                                                                                         <  2:235936/59‑1 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                 CAGATATCGGTTCGGTGATCGTCTACGGTTTGCTGGTTGGGCTGATGGCATCACTGATCGGTGGCCCACTTTTCCTTAAATTTCTGGGTCAACGACTGCCCTTTAAACCTGTACCCACAGAGTTTGCAGATCTCAAAGTTCGCGATGAAAAAACACTACCGTCATTAGGCGCAACGTTATTCACCATACTGCTACCCATTGCGCTGATGTTGGTTAAAACGATTGCCGAATTGAATATGGCGCGTGAGAGTGGTTTGTATATCTTGGTTGAGTTTATTGGCAACCCTATCACTGCCATGTTTATCGCCGTGTTTGTCGCCTATTATGTGTTGGGTATACGCCAGCATATGAGCATGGGGACGATGCTCACACATACGGAAAATGGCTTCGGTTCTATTGCTAATATTTTGCTGATTATCGGGGCCGGAGGCGCATTCAACGCCATTTTAAAAAGCAGCAGTCTCGCTGATACGCTGGCAGTTATTCTCTCCAATATGCATATGCACCCGATTCTTCTGGCCTGGTTAGT  >  CP009273/2471843‑2472371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.