New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2512596 =	21 (0.550)	7 (0.200)	5/282	NT	28.7%	coding (305/393 nt)	yfeD	DUF1323 family putative DNA‑binding protein
	?	CP009273	2513176 =	16 (0.460)					coding (976/1416 nt)	gltX	glutamyl‑tRNA synthetase

TGTGGCTAAACAAACTGTTAACCGTTGGATCAGAGAAAAAGGCTGGAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTTATTCTGGTCGATACGCAAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCGGGTCTTACCAATTGCGTGAACGGTAACATCCA  >  CP009273/2512345‑2512830                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           tgtgGCTAAACAAACTGTTAACCGTTGGATCAGAGAAAAAGGCTGGAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTNATTCTGGTCGATACGCAAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATAAGACAGACATTGATCAGGAAAAAGTcgcg                                                                                                                                                                                                                      <  1:499072/274‑1 (MQ=255)           caaacTGTTAACCGTTGGATCAGAGAAAAAGGCTGGAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTTATTCTGGTCGATACGCAAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTc                                                                                                                                                                                                           <  1:339323/275‑1 (MQ=255)                          tGGATCAGAGAAAAAGGCTGGAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTTATTCTGGTCGATACGCAAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGAAAAATCATCAACGCGATAGAAAAAATGAAAGACATTGAGCAGGAAAAAGGACCGCAATTTTTTGAACGGGAAgggaaagg                                                                                                                                                                                            >  2:83450/1‑269 (MQ=255)                                          gCTGGAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTTATTCTGGTCGATACGCAAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGaaaaa                                                                                                                                                                                                                            >  1:387576/1‑227 (MQ=255)                                              gAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTTATTCTGGTCGATACGCAAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTcg                                                                                                                                                                                                                        <  2:387570/227‑1 (MQ=255)                                                           aactatctggtgcgtctgggctggtcccacggcgatcaggaaatcttcactcgtgaagagatgatcaaatacttcactttgaatgccgtcagcaaatctgccagtgcgttcaacaccgacaagctgctgtggctgaaccatcactacattaacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGaaa                                                                                                                                                                                                                              <  1:46242‑M1/15‑1 (MQ=255)                                                                       cgtctgggctggtcccacggcgatcaggaaatcttcactcgtgaagagatgatcaaatacttcactttgaatgccgtcagcaaatctgccagtgcgttcaacaccgacaagctgctgtggctgaaccatcactacattaacgcgctgccgccggagtatgttgctactcacttacagtggcACAt                                                                                                                                                                                                                                         <  2:95145‑M1/4‑1 (MQ=255)                                                                           tgggctggtcccacggcgatcaggaaatcttcactcgtgaagagatgatcaaatacttcactttgaatgccgtcagcaaatctgccagtgcgttcaacaccgacaagctgctgtggctgaaccatcactacattaacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAg                                                                                                                                                                                                                                     >  1:95146‑M1/178‑185 (MQ=255)                                                                              gTCGTTCCAGACTTATTCTGGTCGATACTCAATTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCTGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGc                                                                                                                                        <  1:83451/275‑1 (MQ=255)                                                                                 aaataggcatttttCTGGTCCATATGCAAGTTTGCGAGTTTATTCCGAACACGCCATCCTTCCATAACACACCAATGTTGCTGTAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCACGGCGTATCGACAAATCATCAACGCGATAGATAATATTACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCa                                                                                                                                       <  2:494862/261‑1 (MQ=255)                                                                                                  gTCGATACGCAAGTTGGCGAGTTTATTCATAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATAATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTNTGTCACGTGAAGGAATTCGCAATTTCCTAGCCCAACTCGATATAGAAGAATCAGCATAAATAAAAAAAAGAAGGAAATTAtctctgtatat                                                                                                                    >  1:494869/1‑268 (MQ=255)                                                                                                                        ttATTCAGAACACGCCAGCATTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACgg                                                                                                                                         >  1:581686/1‑232 (MQ=255)                                                                                                                                                     agcaaatctgccagtgcgttcaacaccgacaagctgctgtggctgaaccatcactacattaacgcgctgccgccggagtatgttgctactcacttacagtggcaca                                                                                                                                                                                                                                          >  2:613645‑M1/104‑106 (MQ=255)                                                                                                                                                                     aaGCTGAATAGTGAATTTCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTAAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGAt                                                 <  1:574518/275‑1 (MQ=255)                                                                                                                                                                                agaATTGCTGAATACGCTCGTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCt                                                                                                                                                                                   >  1:592006/1‑134 (MQ=255)                                                                                                                                                                                    ttGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGcc                                                                                                                                                                               <  2:591997/134‑1 (MQ=255)                                                                                                                                                                                    ttGCTGAATACGCTCCTGGAGAACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACAGTGAGCATGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTTCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGAt                                                 <  1:406666/260‑1 (MQ=255)                                                                                                                                                                                                         cACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCGGGTCTTACCAATTGCGTGaa              >  1:412557/1‑274 (MQ=255)                                                                                                                                                                                                           cgcgCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGt                                                                                                                                                                                                                          >  1:520394/1‑68 (MQ=255)                                                                                                                                                                                                            acattaacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGCAAAAGTCGCACAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACgg                                                                                                                                         <  2:131849‑M1/100‑1 (MQ=255)                                                                                                                                                                                                            acattaacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGc                                                                                                                                                        <  2:229896‑M1/85‑1 (MQ=255)                                                                                                                                                                                                            acattaacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCcagctc                                                          <  2:487756‑M1/179‑3 (MQ=255)                                                                                                                                                                                                               ttaacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACg                                                                                                                                                                                                        <  2:706527‑M1/37‑1 (MQ=255)                                                                                                                                                                                                               ccccGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTcgcg                                                                                                                                                                                                                      <  2:520387/68‑1 (MQ=255)                                                                                                                                                                                                                taacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCataa                                                                                                                                                    >  1:229901‑M1/45‑133 (MQ=255)                                                                                                                                                                                                                taacgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGAAAAAGTCGCACAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAgg                                                                                                                                     >  1:131850‑M1/45‑148 (MQ=255)                                                                                                                                                                                                                  cGGCGTATCGACACATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTGCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTTATACGCTCGATACTGCGGGTCTTACCAATTGCGTGAACGGTAACATc    <  1:368289/275‑1 (MQ=255)                                                                                                                                                                                                                   cgcgctgccgccggagtatgttgctactcacttacagtggcACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGaa                                                                                                                                                                                                    >  1:706537‑M1/42‑82 (MQ=255)                                                                                                                                                                                                                     atgatagaaaaaTCATAAAAGAANTTGATAATATGACAGACATTGAGTAGGAAAAAGTCTCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCGGGTCTTACCAATTGCGTGAACGGTAACATCCa  <  2:412550/265‑1 (MQ=255)                                                                                                                                                                                                                                   atcaACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCGGGt                               <  2:160210/231‑1 (MQ=255)                                                                                                                                                                                                                                       aCGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACgg                                                                                                                                         >  1:114424/1‑121 (MQ=255)                                                                                                                                                                                                                                           gatagataATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAgg                                                                                                                                     <  2:114423/121‑1 (MQ=255)                                                                                                                                                                                                                                                         cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGccc                                                                                                                                                                              >  2:697691/1‑66 (MQ=255)                                                                                                                                                                                                                                                         cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTAc                                                                                             >  1:281715/1‑147 (MQ=255)                                                                                                                                                                                                                                                         cagacaTGGAGCAGGAAAAAGCCGCGCAATGTTGGTCACGGGAAGGAATACGCAATTTCCTCGACCGTCTCGATAATGACGAATCAGCATAAATAAAAAACGGCAGGATAGTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGAt                                                 <  1:96991/191‑1 (MQ=255)                                                                                                                                                                                                                                                          agacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAAc                                                                                                                                           >  2:624607/1‑100 (MQ=255)                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           TGTGGCTAAACAAACTGTTAACCGTTGGATCAGAGAAAAAGGCTGGAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTTATTCTGGTCGATACGCAAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAATACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCGGGTCTTACCAATTGCGTGAACGGTAACATCCA  >  CP009273/2512345‑2512830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.