New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2512596 =	21 (0.550)	7 (0.200)	5/282	NT	28.7%	coding (305/393 nt)	yfeD	DUF1323 family putative DNA‑binding protein
	?	CP009273	2513176 =	16 (0.460)					coding (976/1416 nt)	gltX	glutamyl‑tRNA synthetase

CGTGATGAACGTTTTCAGCGGTCCAGTCAGTAATCGCGGCCAGTTTGTCACGAACCACTTCCAGCGGCTGACGCGCTACCGGACGCAGATGTTTTTTCGCGGCGTCGGCATCGAACTCAGCAAAATCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCAT  >  CP009273/2512927‑2513397                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                              ctgcatgaCCGGTTTCGCCGGTCCAGTCAGTATTCCCGGCCCGTTTGTCACGAACCACTTCCAGCGGCGGACGCGCTACCGGACGCAGATGTTTTTTCTCGGCGTCGGCATCGAACTCAGCAAAAGCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACAt                                                                                                                                                                                                        <  2:321144/269‑1 (MQ=255)                                    gcgGCCAGTTTGTCACGAACCACTTCCAGCGGCTGACGCGCTACCGGACGCAGATGTTTTTTCGCGGCGTCGGCATCGAACTCAGCAAAATCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGt                                                                                                                                                                                                                        >  1:180670/1‑222 (MQ=255)                                    gcgGCCAGTTTGTCACGAACCACTTCCAGCGGCTGACGCGCTACCGGACGCAGATGTTTTTTCGCGGCGTCGGCATCGAACTCAGCAAAATCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGt                                                                                                                                                                                                                        <  2:180667/222‑1 (MQ=255)                                                              cAGCGGCTGACGCGCTACCGGACGCAGATGTTTTTTCGCGGCGTCGGCATCGAACTCAGCAAAATCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGc                                                                                                                                                                                                                              <  1:545235/190‑1 (MQ=255)                                                                       gagctggattttattgctgaacgcgaaaatcagcagtaattagcgtgtaaaaagataaacggcaggagataatatcctgccgttttttatttatgctgattcgtcaatatcgagacgggcgaggaaattgcgaattccttcacgtgacaaaaattgcgcgactttttcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGt                                                                                                                                                                                <  2:487756‑M2/48‑1 (MQ=255)                                                                                         aTGTTTTTTCGCGGCGTCGGCATCGAACTCAGCAAAATCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTTCTGACGGCATTCa                                                                                                              >  1:252719/1‑275 (MQ=255)                                                                                                                       aGCAAAATCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTTTCGGTGTTGAACGCACTGGCAAATTTGCTGACGGCAtt                                                                                                                >  1:311431/1‑243 (MQ=255)                                                                                                                       aGCAAAATCTGCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCa                                                                                                                                                                                                                            >  1:719615/1‑135 (MQ=255)                                                                                                                           aaaTCTTCGTAGAAATACCGGCAGCTCTGTGCCATCTCTTGCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGt                                                                                                                                                                                                                        <  2:719605/135‑1 (MQ=255)                                                                                                                                                  cctgccgttttttatttatgctgattcgtcaatatcgagacgggcgaggaaattgcgaattccttcacgtgacaaaaattgtgcgactttttcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTa                                                                                                                                                                                    >  1:131850‑M2/105‑148 (MQ=255)                                                                                                                                                   ctctGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCcggcg                                                                                                                                                                                               >  1:282850/1‑136 (MQ=255)                                                                                                                                                      ccgttttttatttatgctgattcgtcaatatcgagacgggcgaggaaattgcgaattccttcacgtgacaaaaattgtgcgacttttgcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGt                                                                                                                                                                                <  2:131849‑M2/48‑1 (MQ=255)                                                                                                                                                       gtgCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAg                                                                                                                                                                                           <  2:282845/136‑1 (MQ=255)                                                                                                                                                           cttctcTTTCAGCGTCTTGCAGCGTTCGCCCAGCTGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGATCAATGTGGCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGGACGCACTTGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGAc                                            <  1:36593/273‑1 (MQ=255)                                                                                                                                                                 ttatgctgattcgtcaatatcgagacgggcgaggaaattgcgaattccttcacgtgacaaaaattgcgcgactttttcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTa                                                                                                                                                                                    >  1:229901‑M2/90‑133 (MQ=255)                                                                                                                                                                  ttCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGCCGGCATTCAAAGTGAAGTATTTGATCATCTCTTCAAGAGTGAAGATTTCCTGATCg                                                               >  2:169053/1‑249 (MQ=255)                                                                                                                                                                  ttCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGt                                                           >  1:368237/1‑253 (MQ=255)                                                                                                                                                                     gctgattcgtcaatatcgagacgggcgaggaaattgcgaattccttcacgtgacaaaaattgcgcgactttttcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGt                                                                                                                                                                                <  2:229896‑M2/48‑1 (MQ=255)                                                                                                                                                                      gCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGt                                                           <  1:169056/249‑1 (MQ=255)                                                                                                                                                                                                  cACCAGATCGCTCAGCTGGGGGGCGTTAAGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACNCCGGCGGCNGCGCGTTAATGTCGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACGAGATAGTACAGCAGTGCTTCTGGCAAATAACCGt     <  1:466388/275‑1 (MQ=255)                                                                                                                                                                                                      aGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTATGGCAAATAACCGtcat  >  1:117196/1‑274 (MQ=255)                                                                                                                                                                                                           agccagcTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTc                                                                                     >  2:251551/1‑186 (MQ=255)                                                                                                                                                                                                               agcTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGa                                                                                 <  1:251556/186‑1 (MQ=255)                                                                                                                                                                                                                 ttcacgtgacaaaaattgcgcgactttttcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGcgcg                                                                                                                                                                                       >  1:706537‑M2/42‑82 (MQ=255)                                                                                                                                                                                                                     cgtgacaaaaattgcgcgactttttcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTaa                                                                                                                                                                                   <  2:706527‑M2/45‑1 (MQ=255)                                                                                                                                                                                                                                       atatTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGAt                                   >  2:46242/1‑208 (MQ=255)                                                                                                                                                                                                                                           tttcctgctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGtt                               <  1:46242‑M2/193‑1 (MQ=255)                                                                                                                                                                                                                                                  ctcaatgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCa                                               >  1:95146‑M2/9‑185 (MQ=255)                                                                                                                                                                                                                                                      atgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACg                                           <  2:95145‑M2/181‑1 (MQ=255)                                                                                                                                                                                                                                                       tgtGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCt                                                                                                                         >  2:613645‑M2/4‑106 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                              CGTGATGAACGTTTTCAGCGGTCCAGTCAGTAATCGCGGCCAGTTTGTCACGAACCACTTCCAGCGGCTGACGCGCTACCGGACGCAGATGTTTTTTCGCGGCGTCGGCATCGAACTCAGCAAAATCTTCGTAGAAATAACGGCAGCTCTGTGCCATCTCTTTCAGCGTCTTGCAGCGTTCGCCCAGCAGTTTCACCAGATCAGCCAGCTGCGGGCCGTTACGGGTATCGATATTTTCCTGCTCAATGTGCCACTGTAAGTGAGTAGCAACATACTCCGGCGGCAGCGCGTTAATGTAGTGATGGTTCAGCCACAGCAGCTTGTCGGTGTTGAACGCACTGGCAGATTTGCTGACGGCATTCAAAGTGAAGTATTTGATCATCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCAT  >  CP009273/2512927‑2513397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.