New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 2607496 | 32 (0.830) | 4 (0.110) | 4/310 | NT | 10.4% | coding (204/849 nt) | focB | putative formate transporter |
? | CP009273 | = 2608508 | 37 (0.980) | coding (733/1062 nt) | yfgO | putative UPF0118 family inner membrane permease |
TCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTGCGCCGAGGGCAAAATGCATCAT > CP009273/2607227‑2607766 | tCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCtggtgg > 1:119026/1‑274 (MQ=255) aGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGNCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCt > 1:602270/1‑271 (MQ=255) tGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGc > 1:130000/1‑274 (MQ=255) attttGCATGAGTAAGCAAGGGACACACACTCTCTTTCGTCTTGCAGCTGGGCGCCAGCAAAGCTGCAATAGCTGAACGGATTTCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTGCACAGGCATTAGCGCATCTGGTGGGCGGCCTTTGCTTGACGGTCGGCGTTATTTTGCTGGCGGTGTGCGGCAcc < 2:677416/274‑1 (MQ=255) ttGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATCAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCGTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAAACCATTTGGTGGGCGGCCTTTGCTTTACACTCGCCGTGATTTGGTTGGCGGTTTgtgtcctccgt > 2:165941/1‑265 (MQ=255) cGACTTGCAGTTCAGCGCAGCAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATAAATTTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCa < 2:129999/274‑1 (MQ=255) ggcTTGCATTTGTGCGCCAGAAAATCGGCATTCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCaaa < 1:165944/273‑1 (MQ=255) tGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTTGGCGGCCTTTGCTTTACACCCTCCTTTATTTTTCTGGCGGTTTTCGGCACCAGCCTGTTCTCCTCGTCGGTAATGAGGTTGATGGCaaaaatt > 2:289385/1‑273 (MQ=255) ggCAATCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGctggtcggcttctcggttcttattccgtacattggcgcatttgtggtgaccattccggtggttggcgtggcgccattccagtttggcgcaggtactgaattctggagctgcttcgcg > 1:316765‑M1/1‑157 (MQ=255) cgccCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCTGGGCGTTATTATTTGGCGAACTTGGCTGCTTCACGCACTTc > 1:53241/1‑275 (MQ=255) gTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACATTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAAACCATCTGGTGGGCGCCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCCCCAGCCTGTTACCCTCGTCGGTAATGACGGTGATGGCAAAAAGTTGGGGCGTTATTAGTTGGCGAACTTGGCTGATTACAGCACTTCTGGTGGCCGTGGGTGAGCTTGCATGTAtttc > 2:499431/1‑273 (MQ=255) tttAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTg > 1:269561/1‑273 (MQ=255) tGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCtgg > 1:377796/1‑96 (MQ=255) ggCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTggg > 2:57964/1‑99 (MQ=255) gATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTggg < 2:377790/96‑1 (MQ=255) aTGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGggcggc < 1:57964/99‑1 (MQ=255) cGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGctggtcggcttctcggttcttattccgtacattggcgcatttgtggtgaccattccggtggttggcgtggcgctattccagtttggc > 1:579231‑M1/1‑79 (MQ=255) cGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGt > 1:259590/1‑140 (MQ=255) gtttttatgGCGGTCGGATTTACTTTTTACCTTTCCGTTATCGCCGATTCCCCGTCTTCACAGGTATTAACCCATCTGctggtcggcttctcggttcttattccgtacattggcgcatttgtggtgaccattccggtggttggcgtggcgctattccagtttggcgcaggtactgaattctggagctgcttcgcggtgtatctgattattcaggcgctggacggcaacctgttagtgccggtgttgttctccgaagcggttaacctgcatccgct < 2:316759‑M1/272‑198 (MQ=255) tgtTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGt > 1:327276/1‑138 (MQ=255) tgtTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACAGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTcc > 1:158980/1‑275 (MQ=255) tttATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGctggtcggcttctcggttcttattccgtacattggcgcatttgtggtgaccattccggtggttggcgtggcgctattccagtttggcgcag < 2:579222‑M1/166‑92 (MQ=255) tttATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCAc < 2:259585/140‑1 (MQ=255) tttATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCg < 1:289391/274‑1 (MQ=255) ttttGGCGATCGGATTTACTTTTTTCCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGAGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTCGTTTTCCggg < 1:708406/272‑1 (MQ=255) tATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCAc < 2:327270/138‑1 (MQ=255) tATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTGTATTTTGCTGGCGGTTTGCGGCACCAGCCTTTTCACCGTGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTAAGTAGTTGGCGAACATGGCTGATTAACGCACTTCAGGTGGCATGCGGGTAGCGGGCAGGTATTGGCTGGTTCAGTTGGGTAGTCTGGGTTTCCggtc > 2:708396/1‑273 (MQ=255) ggCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTG > 1:8535‑M1/1‑70 (MQ=255) aTCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCtggtgg < 2:8535/70‑1 (MQ=255) tCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGggcg > 2:696055/1‑72 (MQ=255) tCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGggcg > 1:468146/1‑72 (MQ=255) aTTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCt < 2:468139/72‑1 (MQ=255) aTTTACTTTTTACCTTTCCGTTATAGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCt < 1:696064/72‑1 (MQ=255) ttttACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTTGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGGCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAAcg < 2:602261/274‑1 (MQ=255) tACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTGCACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGACTGTTCAACTCGTCGGTGATGACGGAGATTGCAAAAAGTCGGGGTGTTTGTCGTTGCCGAACTTGGTTGATTAACGCATGTCTTGTGGCTTGCGTTAATCTAGCAGTGTTTGCCGGTTTCGGTTAGTTAAGCTGGTTTTCATGGATGGTGGTTAGTGatagtgacct > 2:611654/1‑266 (MQ=255) ttttgCCGTTGCCCTGTCTTCACGGGCATTAATCCATTTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCTGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTAGTAGTTGGCGAACGTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATCTGGGGAGTcg < 1:699132/271‑1 (MQ=255) tttCGCCGTTTCCTCGTTTTCACATGCATTTTACCATCTGGTGGGCGGCCTTTGCTTTTCACTCGGCTTTATTTTGCTGGCGGTTTGCGTATCCAGCCTGTTCACCTCGTCGGTAATGACGGNGATGGCAAAAAGTGGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCATTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTcg < 1:611663/273‑1 (MQ=255) tgtCGCCGATTNACCGTCTTCACAGGCATTACCCCGTCTGGGGGGCTGCTTTTGCTTTACTCTCGGGTTTATTTTGCTGGCGGTTGGCGGCACCAGCCTGTTCACCGCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTcg < 2:53241/273‑1 (MQ=255) gctctccatgCATTACCCCTTCTGGTGGGCGTCTTTTTCTTTGCTCTCGGTTTTTTTTTGGTGGCGTTTTGCGGCACCGGCCTGTTCACCTCGTCGGTAATGACAGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCATTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTgcgc < 2:158977/266‑1 (MQ=255) acTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCGTTATTTTGCTGGCGGTTTGc > 2:245733/2‑72 (MQ=255) cacaGGCATTAACCCATCTGGTGGGCGGCCTTTGCGTTACAGTCGGCTTTATTTTGCTGGCGGTTAGCGGCa < 1:245738/72‑1 (MQ=255) cATTAACCCATCTGGTTGGCGGCCTTTGCTTTACACGTGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATNACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTGTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGACCCGCAGTTTTACATTGCGCCGAGGGCaaa < 1:499438/275‑1 (MQ=255) aTCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTTGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGGCGCGGTTTTACACTGCGCCGAGGGAAAAATGcatcat > 1:226718/1‑275 (MQ=255) | TCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTGCGCCGAGGGCAAAATGCATCAT > CP009273/2607227‑2607766 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |