| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2607496 | 32 (0.830) | 4 (0.110) | 4/310 | NT | 10.4% | coding (204/849 nt) | focB | putative formate transporter |
| ? | CP009273 | = 2608508 | 37 (0.980) | coding (733/1062 nt) | yfgO | putative UPF0118 family inner membrane permease | |||||
AGAATCCCCACAAACCACCGAAGATCACCACCGATAAAATAATCACCAGCGGATGCAGGTTAACCGCTTCGGAGAACAACACCGGCACTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCTTTCAGCAGGAAGAAGACCATCAATGGCACCAGCACCAGATAGA > CP009273/2608265‑2608750 | aGAATCCCCACAAACCACCGAAGATCACCACCGATAAAATAATCACCAGCGGATGCAGGTTAACCGCTTCGGAGAACAACACCGGCACTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGCATACGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAAAAGTTCAGccc > 1:196985/1‑274 (MQ=255) atgcccAAANACTAACGAACACAACCACAGAGAAATTAAGCACCAGCGCATTCATGTTCACCGAATCGGAAGACAAACCCGGCACTAACATGTGTCCGTCCAGCGCCGGAATAGTCAGATACACCGCGAAGGAGCTCCAGAATACAGTACCTGCGCCAAAGTGGAATACCACCACGCCAACCACCGGAATGGTCACCACAAATGCGGCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCCAATAGTTCAGCCCGAag < 2:268958/272‑1 (MQ=255) tCACCAGCGGATGCAGGTTAACCGCTTCGGAGAACAACACCGGCACTAACAAGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAACCTGGAATAGCGACACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGATCCCCAGCCAGGTGGCGATCCCCACCACGa‑tc < 1:34212/275‑1 (MQ=255) aGCGGATGCAGGTTAACCGCTTCGGAGAACAACACCGGCACTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGcagatgggttaatacctgtgaagacggggaatcggcgataacggaaaggtaaaaagtaaatccgaccgccataaaaac < 2:316759‑M2/275‑79 (MQ=255) cGGATGCAGGTTAACCGCTTCGGAGAACAACACCGGCACTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGt > 2:304832/1‑249 (MQ=255) tGCAGGTTAACCGCTTCGGAGAACAACACCGGCACTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCg < 1:304838/249‑1 (MQ=255) cTTCGGAGAACCACACCGGCACTAACAGGTTGCCGTCCAGCGCCTGAATACTCAGATACACCGCAAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTCCGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGATAAGCCCGAAGAACAAGAACCACAGCCACGTGGCGATCCCCACCCCGACCCATC‑CCAGCACTTTGCCGCggcca > 2:303820/1‑272 (MQ=255) cGGCACTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTg > 1:344072/1‑167 (MQ=255) aCTAACAGGTTGCCGTCCATCTCCTGAATAATCAGATACACCGCGAAGAAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCcag < 2:344066/167‑1 (MQ=255) cTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGNCCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑ACATCCACAGCACTTTGCCGCGGATATAGTTGGTAATTTGTTGAtta > 1:611367/1‑274 (MQ=255) aaCAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCcgc > 1:501361/1‑247 (MQ=255) ggTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGat < 2:501354/247‑1 (MQ=255) ccGTCCAGCGCCTGAATAATCAGATACACAGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACAGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGCATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCACCCCGAAGAGCAAGa > 1:159119/1‑187 (MQ=255) cgcgAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATGGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGcagatgggttaatgcctgtgaagacggggcatcggcgataacggaaaggtaaaaagtaaatccgatcgccataaacacgccagcggacatcgccattaaaaagaccgacactttactgcgggcaattttatgggcggcaatccgttcagcgattgcc > 1:316765‑M2/1‑117 (MQ=255) cgcgAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACt > 1:135985/1‑202 (MQ=255) cgcgAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTc > 1:270123/1‑254 (MQ=255) cgAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCANGA‑TCATCTNCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGgc > 1:483472/1‑275 (MQ=255) aggcagcTCCACAATTCAGAACCGGAGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGc < 2:135984/200‑1 (MQ=255) aaGCAGCTCCAGAATTCAGTACCTGCGCCAAACTTGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCAATCCCCACCACCN‑TCATCTCCNGCCCTTTGCCGCGGATATAGTTGGTGATTTGTTGATTAATCTCCTTCCACAACTGTCCTGCCAGCCCACGGTTAccacgca > 1:466366/1‑268 (MQ=255) aaGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGc < 2:270118/254‑1 (MQ=255) agcTCCAGAATTCAGTACCTGCGACAAAATGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCANCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCCGCAGCAc > 1:496277/1‑274 (MQ=255) cTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGcagatgggttaatgcctgtgaagacggggcatcggcgataacggaaaggtaaaaagtaaatccgatcgccataaa < 2:579222‑M2/166‑76 (MQ=255) gcCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGcagatgggttaatgcctgtgaagacggggcatcggcgataacggaaaggtaaaaagtaaatccgatcgccataaacacg > 1:579231‑M2/1‑87 (MQ=255) aaaCTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCcagc > 1:51355/1‑94 (MQ=255) tGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCcagcagca < 2:51355/94‑1 (MQ=255) aaTAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACCTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGCAAACACCCGGCGACCGGCGTTCCGCCTCTGCTCTTTTTc > 2:599759/1‑275 (MQ=255) gcgcCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCttt < 1:303826/274‑1 (MQ=255) ccacgccaACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGNTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCTTTcagc < 1:599768/275‑1 (MQ=255) aacaaaacaAATGCGCCAAGGTAAGGAATAAAAACCGAGAAGCCGACAAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCTTTCAGCAGGAAGAAGACCATCAAt < 2:496270/267‑1 (MQ=255) ccAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGAAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCANGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCTTTCAGCAGGAAGAAGACCATCAATGGCACCAGCACCAGAt > 1:516984/1‑274 (MQ=255) agcaaggAACAANAACCGAGAAGAAGACCAGCACTGCCACCAGCAGCGAATAGTCCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCTTTCAGCAGGAAGAAGACCATCAATGGCACCAGCACCAGATAGa < 2:516977/268‑1 (MQ=255) tAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGt > 1:229898/1‑76 (MQ=255) tAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGt > 1:586045/1‑76 (MQ=255) gAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCg > 2:595907/1‑190 (MQ=255) aaCCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCg < 2:586036/76‑1 (MQ=255) aaCCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCg < 2:229893/76‑1 (MQ=255) cGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACg < 1:595916/190‑1 (MQ=255) gagaAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGa > 1:542516/1‑73 (MQ=255) gagaAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCttt > 2:248771/1‑215 (MQ=255) aGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATccc < 2:542507/73‑1 (MQ=255) aGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCTTTcagc < 1:248776/215‑1 (MQ=255) ccGACCAGCAGTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCAGCTCTTTGTCTTTCAGCAGga > 1:713756/1‑217 (MQ=255) aCCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGcc > 2:36666/1‑147 (MQ=255) gCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGcc < 1:36666/147‑1 (MQ=255) | AGAATCCCCACAAACCACCGAAGATCACCACCGATAAAATAATCACCAGCGGATGCAGGTTAACCGCTTCGGAGAACAACACCGGCACTAACAGGTTGCCGTCCAGCGCCTGAATAATCAGATACACCGCGAAGCAGCTCCAGAATTCAGTACCTGCGCCAAACTGGAATAGCGCCACGCCAACCACCGGAATGGTCACCACAAATGCGCCAATGTACGGAATAAGAACCGAGAAGCCGACCAGCACTGCCAGCAGCAGCGAATAGTTCAGCCCGAAGAGCAAGAACCCCAGCCAGGTGGCGATCCCCACCACGA‑TCATCTCCAGCACTTTGCCGCGGATATAGTTGGTGATTTGTTGATTCATCTCCTTCCACACCTGTCCTGCCAGCCCACGGTTACGCGGCAGCACCCGGCGAACGGCGTTCAGCATCTGCTCTTTGTCTTTCAGCAGGAAGAAGACCATCAATGGCACCAGCACCAGATAGA > CP009273/2608265‑2608750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |