New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2607606 =	26 (0.680)	4 (0.110)	4/298	NT	15.8%	coding (314/849 nt)	focB	putative formate transporter
	?	CP009273	2608243 =	18 (0.490)					coding (998/1062 nt)	yfgO	putative UPF0118 family inner membrane permease

CGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTGCGCCGAGGGCAAAATGCATCATACATTTACTGAATCTGTCAGCCTCGGCATTATGTGCAATCTGATGGTTTGCCTGGCGCTGTGGATGAGTTATTGCGGGCGTTCGTTATGCGACAAAA  >  CP009273/2607361‑2607863                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                  cgccCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCTGGGCGTTATTATTTGGCGAACTTGGCTGCTTCACGCACTTc                                                                                                                                                                                                                                      >  1:53241/1‑275 (MQ=255)                                gTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACATTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAAACCATCTGGTGGGCGCCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCCCCAGCCTGTTACCCTCGTCGGTAATGACGGTGATGGCAAAAAGTTGGGGCGTTATTAGTTGGCGAACTTGGCTGATTACAGCACTTCTGGTGGCCGTGGGTGAGCTTGCATGTAtttc                                                                                                                                                                                                       >  2:499431/1‑273 (MQ=255)                                     tttAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTg                                                                                                                                                                                                    >  1:269561/1‑273 (MQ=255)                                                            tgtTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACAGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTcc                                                                                                                                                                           >  1:158980/1‑275 (MQ=255)                                                              tttATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCg                                                                                                                                                                          <  1:289391/274‑1 (MQ=255)                                                               ttttGGCGATCGGATTTACTTTTTTCCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGAGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTCGTTTTCCggg                                                                                                                                                                        <  1:708406/272‑1 (MQ=255)                                                                tATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTGTATTTTGCTGGCGGTTTGCGGCACCAGCCTTTTCACCGTGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTAAGTAGTTGGCGAACATGGCTGATTAACGCACTTCAGGTGGCATGCGGGTAGCGGGCAGGTATTGGCTGGTTCAGTTGGGTAGTCTGGGTTTCCggtc                                                                                                                                                                       >  2:708396/1‑273 (MQ=255)                                                                                   ttttACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTTGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGGCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAAcg                                                                                                                                                     <  2:602261/274‑1 (MQ=255)                                                                                      tACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTGCACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGACTGTTCAACTCGTCGGTGATGACGGAGATTGCAAAAAGTCGGGGTGTTTGTCGTTGCCGAACTTGGTTGATTAACGCATGTCTTGTGGCTTGCGTTAATCTAGCAGTGTTTGCCGGTTTCGGTTAGTTAAGCTGGTTTTCATGGATGGTGGTTAGTGatagtgacct                                                                                                                                                 >  2:611654/1‑266 (MQ=255)                                                                                                 ttttgCCGTTGCCCTGTCTTCACGGGCATTAATCCATTTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCTGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTAGTAGTTGGCGAACGTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATCTGGGGAGTcg                                                                                                                                      <  1:699132/271‑1 (MQ=255)                                                                                                 tttCGCCGTTTCCTCGTTTTCACATGCATTTTACCATCTGGTGGGCGGCCTTTGCTTTTCACTCGGCTTTATTTTGCTGGCGGTTTGCGTATCCAGCCTGTTCACCTCGTCGGTAATGACGGNGATGGCAAAAAGTGGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCATTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTcg                                                                                                                                      <  1:611663/273‑1 (MQ=255)                                                                                                 tgtCGCCGATTNACCGTCTTCACAGGCATTACCCCGTCTGGGGGGCTGCTTTTGCTTTACTCTCGGGTTTATTTTGCTGGCGGTTGGCGGCACCAGCCTGTTCACCGCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTcg                                                                                                                                      <  2:53241/273‑1 (MQ=255)                                                                                                                 gctctccatgCATTACCCCTTCTGGTGGGCGTCTTTTTCTTTGCTCTCGGTTTTTTTTTGGTGGCGTTTTGCGGCACCGGCCTGTTCACCTCGTCGGTAATGACAGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCATTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTgcgc                                                                                                                      <  2:158977/266‑1 (MQ=255)                                                                                                                           cATTAACCCATCTGGTTGGCGGCCTTTGCTTTACACGTGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATNACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTGTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGACCCGCAGTTTTACATTGCGCCGAGGGCaaa                                                                                                            <  1:499438/275‑1 (MQ=255)                                                                                                                                    aTCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTTGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGGCGCGGTTTTACACTGCGCCGAGGGAAAAATGcatcat                                                                                                   >  1:226718/1‑275 (MQ=255)                                                                                                                                                   tttGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAAc                                                                                                                                                                                                                                                          >  1:695298/1‑109 (MQ=255)                                                                                                                                                       cTTTACACGCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTgg                                                                                                                                                                                                                                                      <  2:695289/109‑1 (MQ=255)                                                                                                                                                               tCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAAt                                                                                                                                                                                                                     >  1:68035/1‑134 (MQ=255)                                                                                                                                                               tCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCt                                                                                                                                                                                   >  1:653081/1‑168 (MQ=255)                                                                                                                                                                   cTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTgg                                                                                                                                                                                                                 <  2:68034/134‑1 (MQ=255)                                                                                                                                                                   cTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGtt                                                                                                                                                                               <  2:653072/168‑1 (MQ=255)                                                                                                                                                                          ttcgttccgggtggCGGCACCGGCCTGTTTACCTCGTCGGTAATGGAGGTGTTTGCAAAAAGTCGGGGCGTTTTTAGTTGGCGAACTTGGCTGATTAACGCACGTCTGGGGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGATGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTGCGCCGAGGGCAAAATGCATCATACATTTACTGAATCTGTCAGCCTCGGCATTATGTGCa                                                              <  2:119025/261‑1 (MQ=255)                                                                                                                                                                           tGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTa                                                                                                                                                                                                           >  1:43796/1‑132 (MQ=255)                                                                                                                                                                               ggCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGc                                                                                                                                                                                                       <  2:43796/132‑1 (MQ=255)                                                                                                                                                                                                ttttttgtacgtggtcgGTAATGACGTTGTTGGCTAAAATTCGGGTCTTTATTTGTTGGCGATCTTGTCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTTCCTGTTTCAGTTTGTGAATCTGTTGTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGTGAGTCGCGGTTTTACTCTGTGCCGAGGTCAAAATGCATCATACATTTACTGAATCTGTCAGCCTCGGCATTATGTGCAATCTGATGGTTTGCCTGGCGCt                                        <  2:226713/261‑1 (MQ=255)                                                                                                                                                                                                                 gtttgtggggattctggggcgtattcttcgccattccGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCt                                                                                                                                                                      <  1:283356‑M1/94‑1 (MQ=255)                                                                                                                                                                                                                    tgtggggattctggggcgtattcttcgccattccGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTc                                                                                                                                                                                                <  2:254337‑M1/68‑1 (MQ=255)                                                                                                                                                                                                                     gtggggattctggggcgtattcttcgccattccGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGtg                                                                                                                                                                  >  2:283351‑M1/34‑131 (MQ=255)                                                                                                                                                                                                                        gggattctggggcgtattcttcgccattccGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGtt                                                                                                                                                                                            >  1:254342‑M1/31‑102 (MQ=255)                                                                                                                                                                                                                                     gaGTCGTGGGGTTCTTAGTTGGCGCTCTTGGCTGATTATCGCTCTTTTGGTCGGCTGGGGTAATCTGGCAGTTATTGCCTGTTTCAGGTTGTTAATCTGGGTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTGCGCCGAGGGGAAAATGCATCATACATTTACTGACTCTTTCAGCCTCGGCATTATGTGCAATCTGATGGTTTGCCTGGCGCTGTGGATGAGTTATTGCGGGCGTTCGTTATGCTACaaaa  <  2:36867/274‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                  CGCCCATAAAATTGCCCGCAGTAAAGTGTCGGTCTTTTTAATGGCGATGTCCGCTGGCGTGTTTATGGCGATCGGATTTACTTTTTACCTTTCCGTTATCGCCGATGCCCCGTCTTCACAGGCATTAACCCATCTGGTGGGCGGCCTTTGCTTTACACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACGGTGATGGCAAAAAGTCGGGGCGTTATTAGTTGGCGAACTTGGCTGATTAACGCACTTCTGGTGGCCTGCGGTAATCTGGCAGGTATTGCCTGTTTCAGTTTGTTAATCTGGTTTTCCGGGCTGGTGATGAGTGAAAACGCGATGTGGGGAGTCGCGGTTTTACACTGCGCCGAGGGCAAAATGCATCATACATTTACTGAATCTGTCAGCCTCGGCATTATGTGCAATCTGATGGTTTGCCTGGCGCTGTGGATGAGTTATTGCGGGCGTTCGTTATGCGACAAAA  >  CP009273/2607361‑2607863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.