New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2638679	13 (0.340)	6 (0.160)	5/298	NT	26.5%	coding (2006/2313 nt)	pbpC	penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain
	?	CP009273	= 2638736	21 (0.580)					coding (1949/2313 nt)	pbpC	penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain

CCCGCGTTCAGTTAACGGTTCGCCATTCAGAAACCACCAGCGTTCACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTCCCGTCCAGCAGCCAGGTTGCCAGGCGGCGGCGACAGTTACCGTC  >  CP009273/2638471‑2638896                                                                                                                                                                                                                  |                                                                                                                                                                                                                          cccGCGTTCAGTTAACGGTTCGCCATTCAGAAACCACCAGCGTTCACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGtt                                                                                                                                                                                                   >  1:286976/1‑233 (MQ=255)         cAGTTAACGGTTCGCCATTCAGAAACCACCAGCGTTCACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCATCGGGAGCTGGGCATCGTGTCCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACAGTTATCATTTCTTGTCGCGCTTGCGGGCat                                                                                                                                                 >  1:207599/1‑274 (MQ=255)                                             cACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGGGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGGCATCCGCGGCAACACGTTTGCCCTTTTTNTccaggcaa                                                                                                             >  2:279012/1‑274 (MQ=255)                                                            ttGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGTTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATg                                                                                              <  1:279017/275‑1 (MQ=255)                                                                                  gtCCGCTTCGCCCGGTAAACGTTTACTAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTcc                                                                         <  1:227488/273‑1 (MQ=255)                                                                                                    aCGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCCTCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGTTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGACAATAATGACATACTGCTCCGGCAGTAAAAGAGTTagcg                                                      >  1:123823/1‑275 (MQ=255)                                                                                                    aCGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGCTGAT‑TGCCCGCAAGCGCGACaagaaatgataaatgtctggccgctaccgctggaaccctggctg                                                                                                                                                                               >  2:460562‑M1/1‑110 (MQ=255)                                                                                                        ttAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGCTGAT‑TGCCCGCAAGCGCGACaagaaatgataaacgtctggctgctaccgctggaaccctggctgcccg                                                                                                                                                                           <  1:460569‑M1/154‑49 (MQ=255)                                                                                                         taataaTCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCCGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTg                                                  >  1:409343/1‑274 (MQ=255)                                                                                                                               gCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACaagaaatgataaatgtctggccgctaccgctggaaccctggctg                                                                                                                                                                               >  2:20895‑M1/1‑83 (MQ=255)                                                                                                                                   gTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACaagaaatgataaatgtctggccgctaccgctggaaccctggctgcccg                                                                                                                                                                           <  1:20895‑M1/127‑49 (MQ=255)                                                                                                                                             gCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACaagaaatgataaatgtctggccgctaccgctggaaccctggc                                                                                                                                                                                 >  1:445465‑M1/1‑69 (MQ=255)                                                                                                                                                 gAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACaagaaatgataaatgtctggccgctaccgctggaaccctggctgcc                                                                                                                                                                             <  2:445458‑M1/111‑47 (MQ=255)                                                                                                                                                             gTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCCGATGGGGAAACGAATGACATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTACCGTCCAGCAACCAGGTTGCCAGgcggcggcgcgcggatcttcc  >  2:85789/1‑258 (MQ=255)                                                                                                                                                                           ggCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCg                                                                                                                                                                                       >  2:264979/1‑75 (MQ=255)                                                                                                                                                                               aCTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCa                                                                                                                                                                                   <  1:264984/75‑1 (MQ=255)                                                                                                                                                                                          ccGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGAGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCt                                                                           >  1:281518/1‑168 (MQ=255)                                                                                                                                                                                              tggtAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATccagc                                                                                                                >  1:51086/1‑127 (MQ=255)                                                                                                                                                                                                  aaGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGa                                                                                                            <  2:51086/127‑1 (MQ=255)                                                                                                                                                                                                                  |                                                                                                                                                                                                                          CCCGCGTTCAGTTAACGGTTCGCCATTCAGAAACCACCAGCGTTCACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCAC‑AGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTCCCGTCCAGCAGCCAGGTTGCCAGGCGGCGGCGACAGTTACCGTC  >  CP009273/2638471‑2638896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.