New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2638679	13 (0.340)	6 (0.160)	5/298	NT	26.5%	coding (2006/2313 nt)	pbpC	penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain
	?	CP009273	= 2638736	21 (0.580)					coding (1949/2313 nt)	pbpC	penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain

CAGTTAACGGTTCGCCATTCAGAAACCACCAGCGTTCACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTCCCGTCCAGCAGCCAGGTTGCCAGGCGGCGGCGACAGTTACCGTCACCTTCCGGCAAAGACTGTCCGCCCGGCCAGCAGATAACGCCACGAGTGACTGAGTTCGGGCGCGGGTCTTCCGGCAGATTCGCACTGCGCGACAGTAAGATATTATTGAC  >  CP009273/2638479‑2639007                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                cAGTTAACGGTTCGCCATTCAGAAACCACCAGCGTTCACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCATCGGGAGCTGGGCATCGTGTCCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACAGTTATCATTTCTTGTCGCGCTTGCGGGCat                                                                                                                                                                                                                                                                >  1:207599/1‑274 (MQ=255)                                     cACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGGGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGGCATCCGCGGCAACACGTTTGCCCTTTTTNTccaggcaa                                                                                                                                                                                                                            >  2:279012/1‑274 (MQ=255)                                                    ttGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGTTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATg                                                                                                                                                                                                             <  1:279017/275‑1 (MQ=255)                                                                          gtCCGCTTCGCCCGGTAAACGTTTACTAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTcc                                                                                                                                                                                        <  1:227488/273‑1 (MQ=255)                                                                                            aCGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCCTCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGTTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGACAATAATGACATACTGCTCCGGCAGTAAAAGAGTTagcg                                                                                                                                                                     >  1:123823/1‑275 (MQ=255)                                                                                                 taataaTCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCCGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTg                                                                                                                                                                 >  1:409343/1‑274 (MQ=255)                                                                                                                                                     gTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCCGATGGGGAAACGAATGACATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTACCGTCCAGCAACCAGGTTGCCAGgcggcggcgcgcggatcttcc                                                                                                                 >  2:85789/1‑258 (MQ=255)                                                                                                                                                                                  ccGGTGGTAAGCGCACAGCGCGACGTTCTGATGAGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCt                                                                                                                                                                                          >  1:281518/1‑168 (MQ=255)                                                                                                                                                                                      tggtAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATccagc                                                                                                                                                                                                                               >  1:51086/1‑127 (MQ=255)                                                                                                                                                                                          aaGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGa                                                                                                                                                                                                                           <  2:51086/127‑1 (MQ=255)                                                                                                                                                                                                                   cGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTgtcgcgctgtgcgcttaccaccggcctcgacaagttgcccgccatacggtcacgatgcccagctcccgctgcagctgac                                                                                                                                                                                                  <  1:20895‑M2/127‑80 (MQ=255)                                                                                                                                                                                                                   cGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCt                                                                                                                                                                                          >  1:117427/1‑135 (MQ=255)                                                                                                                                                                                                                   cGGGCAGCCAGGGTTCCAGCGGTAGCAGCCAGACGTTTATCATTTCTTgtcgcgcttgcgggcaatcagcggcctcgacaagttgcccgccatacggtcacgatgcccagctcccgctgcagctgacaggcgttcgcgatggcgcgattattaa                                                                                                                                                                       <  1:460569‑M2/154‑107 (MQ=255)                                                                                                                                                                                                                     ggCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTgtcgcgctgtgcgcttaccaccggcctcgacaagttgcccgccatacggtcacgatgcccagctc                                                                                                                                                                                                                <  2:445458‑M2/111‑66 (MQ=255)                                                                                                                                                                                                                       cAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTgtcgcgcttgcgggcaatcagcggcctcgacaagttgcccgccatacggtcacgatgcccagctcccgctgcagctgacaggcgttcgcgatggcgcgattattaaacgt                                                                                                                                                                   >  2:460562‑M2/1‑44 (MQ=255)                                                                                                                                                                                                                       cAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTgtcgcgctgtgcgcttaccaccggcctcgacaagttgcccgccatacggtcacgatgcccagctcccgctgcagctgacaggc                                                                                                                                                                                              >  2:20895‑M2/1‑44 (MQ=255)                                                                                                                                                                                                                       cAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCgg                                                                                                                                                                                      <  2:117426/135‑1 (MQ=255)                                                                                                                                                                                                                         gCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTgtcgcgctgtgcgcttaccaccggcctcgacaagttgcccgccatacggtcacgatgcccagctcccgc                                                                                                                                                                                                            >  1:445465‑M2/1‑42 (MQ=255)                                                                                                                                                                                                                          ccAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCt                                                                                                                                                                                          >  2:473854/1‑128 (MQ=255)                                                                                                                                                                                                                              ggTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGTGGAAACGCATGCCATTAATGCCTTCCTGCTCCgg                                                                                                                                                                                      <  1:473861/128‑1 (MQ=255)                                                                                                                                                                                                                                    aGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTCCCGTCCAGCAGCCAGGCTGCCAGGCGGCGGCGACAGNTACCGTCACCTTCCGGCAAAGACTGTCCGCCCGGCCAGCAGATAACGCCAAGAGTGACTGAGTTCGGGCGCGGGGCTTCCGGCAGCTTCGc                             >  1:544195/1‑275 (MQ=255)                                                                                                                                                                                                                                          aGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGc                                                                                                                                                                                                                                                                  >  1:213160/1‑40 (MQ=255)                                                                                                                                                                                                                                          aGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa                                                                                                                                                                                                       >  2:212430/1‑99 (MQ=255)                                                                                                                                                                                                                                              gCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATc                                                                                                                                                                                                                                                              <  2:213156/40‑1 (MQ=255)                                                                                                                                                                                                                                              gCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGc                                                                                                                                                                                                   <  1:212434/99‑1 (MQ=255)                                                                                                                                                                                                                                                     ctttATCATTTCTTGTCGGGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTCCCGTCCAGCAGCCAGGTTGCCAGGCGGCGGCGACAGTTACCGTCACCTTCCGGCAAAGACTGTCCGCCCGGCCAGCAGATAACGCCACGAGTGACTGAGTTCGGGCGCGGGTCTTCCGGCAGATTCGCACTGCGCGACAGTAAGa            <  1:184581/274‑1 (MQ=255)                                                                                                                                                                                                                                                       ttttaaTTTTTTGTAGAGCTTGCGGGAAATCCGCGGCCACTCGTCTACCTTTTTCCTCCGCCCAGATGGGGAAACGAATGCCATTAATCCCTTCCTGCTCCGGCAGTAATAGGGTGGGCGGCTGACTCCCGGCCAGCAGCCGGGTTGCCAGGCGGCGGCGACAGTTACCGTCACCTTCCGGCAAAGACTGTGCGCCCGGCCAGCAGATAACGCCACGAGGGACTGAGTTCGGGCGCGGGTCTTCCGGCAGATTCGCACTGCGCGACAGTAAGa            <  2:544186/268‑1 (MQ=255)                                                                                                                                                                                                                                                               tCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGACAGTAATAGAGTTGGCGGCTGACTCCCGTCCAGCAGCCAGGTTGCCAGGCGGCGGCGACAGTTACCGTCACCTTCCGGCAAAGACTGTCCGCCCGGCCAGCAGATCACGCCACGAGTGCCTAAGTTCGGTCGCGGGTCTTCCGGCAGATTCGCACTGCGCGAAAGTAAGCTATAATTTAc  >  1:140248/1‑275 (MQ=255)                                                                                                                                                                                                                                                                  tGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGNCTGACTCCCGTCCAGCAGCCAGGTTGCCAGGCGGCGGCGACAGTTACCGTCACCTTCCGGCAAAGACTGTCCGCCCGGCCAGCAGATAACGCCACGAGTGACTGAGTTCGGGCGCGGGTCTTCCGGCAGATTCGCACTGCGCGACAGTAAGa            <  1:603773/262‑1 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                CAGTTAACGGTTCGCCATTCAGAAACCACCAGCGTTCACCTGCCCCTCCACTTGATTGCAACGGCAAAGTCGCTTCCGCTGCGCCCGGTAAACGTTTAATAATCGCGCCATCGCGAACGCCTGTCAGCTGCAGCGGGAGCTGGGCATCGTGACCGTATGGCGGGCAACTTGTCGAGGCCGGTGGTAAGCGCACAGCGCGACGTTCTGATGCGGGCAGCCAGGGTTCCAGCGGTAGCGGCCAGACATTTATCATTTCTTGTCGCGCTTGCGGGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTAATGCCTTCCTGCTCCGGCAGTAATAGAGTTGGCGGCTGACTCCCGTCCAGCAGCCAGGTTGCCAGGCGGCGGCGACAGTTACCGTCACCTTCCGGCAAAGACTGTCCGCCCGGCCAGCAGATAACGCCACGAGTGACTGAGTTCGGGCGCGGGTCTTCCGGCAGATTCGCACTGCGCGACAGTAAGATATTATTGAC  >  CP009273/2638479‑2639007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.