New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 2844390 | 30 (0.780) | 10 (0.260) | 5/310 | NT | 28.7% | coding (31/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases |
? | CP009273 | = 2844630 | 20 (0.530) | coding (271/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases |
TGTGTCGAAACCAGCTCTCTTGCCTTTTGTTTTGATCTGGTTTGCCGCGGCAGCGTGGCGGAAGGTTGTAAACTGCACCTCGAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCGGATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGC > CP009273/2844117‑2844653 | tgtgTCGAAACCAGCTCTCTTGCCTTTTGTTTTGATCTGGGTTGTCGCGGCAGCGTGGCGGAAGGTTGTAAACTGCACCTCGAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCaa < 1:225678/275‑1 (MQ=255) gtgtCGACACCAGCTCTCTTGCCTTTTGTTTTGATCTGGTTTGCCGCGGCAGCGTGGCGGAAGGTTGTAAACTGCACCTCGAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGTCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAAc < 1:430988/275‑1 (MQ=255) gCTCTCTTGCCTTTTGCTTTGATCTGGTTTGCCGCGGCAGCGTGGCGGCAGGTTGTAAACTGCACCTCGAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGCCAACAGTCTGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGNCGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGCGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGAAACCTGTATATccg > 1:564992/1‑272 (MQ=255) gCAGCGTGGCGGAAGGTTGTAAACTGCACCTCGAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAAACATCATTCCGCGTTTCGTaac > 1:270636/1‑273 (MQ=255) gagGCCGAATGCTGGTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCATGCCCGAAGATGAAAATCAc < 1:579283/275‑1 (MQ=255) ggTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgcccgtaatgcaggtcg > 1:82109‑M1/1‑171 (MQ=255) gtgtGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcg > 1:232186‑M1/1‑170 (MQ=255) cccAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTCTCGTAGCGCGCCAt > 1:363703/1‑192 (MQ=255) ccAGCGAGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGGTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGAc < 1:127893/274‑1 (MQ=255) gcgcGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGc < 2:363697/192‑1 (MQ=255) gTCCACAGTGTCATGGTGACATGCTGGAGATTGTAGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGACATTTGCCCCGGNGGCACGCCNGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGc > 1:477422/1‑254 (MQ=255) acaGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGC‑GTTCAGCCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatacccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcgccttcttcagtctggctgggggtaaattcaggcgctttaatgcaggtgattttcatctt > 1:445754‑M1/1‑112 (MQ=255) cATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcgccttcttcagtctggctgggggtaaattcaggcgctttaatgccggtgatttgcatcttcgcccg > 2:204817‑M1/1‑106 (MQ=255) cATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAACTCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACATGCATTACGGTAATGGCGAAGCGCGCa > 2:157882/1‑274 (MQ=255) cATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTAcccc > 1:115301/1‑224 (MQ=255) cATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGC‑GTTCAGCCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcctcgccatgaccgtaatgcaggccgccttcttcaggccggcgggggggcaatttaggggctttaatgccgggttttttcctgttcgggggg > 2:19053‑M1/1‑105 (MQ=255) gTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCccagc < 2:115300/224‑1 (MQ=255) aCATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGtgatga > 2:564518/1‑121 (MQ=255) aCAGGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGTATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCa < 1:157885/275‑1 (MQ=255) gctgcAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACAt < 1:564527/121‑1 (MQ=255) tgGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAg > 2:31722/1‑98 (MQ=255) tgGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGc > 2:699546/1‑221 (MQ=255) aGACGACGGTTTACAGATTCGGCGGCTAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGAcc < 1:699555/221‑1 (MQ=255) aGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGtg < 1:31722/98‑1 (MQ=255) gacgacGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGC‑GTTCAGCCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcgccttcttcagtctggctgggggtaaattcaggcgctttaatgccggtgattttcatcttcgggcgtgccgccggggcaaatggcgcgctacga < 1:19053‑M1/275‑198 (MQ=255) acgacgGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACg > 1:383535/1‑151 (MQ=255) gtgggttttacagatTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcgccttcttcagtctggctgggggtaaattcaggcgctttaatgccggtgattttcatcttcgggcgtgccgccggggcaaatggcgcgctacga < 2:82108‑M1/268‑198 (MQ=255) cggtggttgaCAGAGTCGGCGGATAGAAATAGACCAGGAGGGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcgccttcttcagtctggctgggggtaaattcaggcgctttaatgccggtgattttcatcttcgggcgtgccgccggggcaaatggcgcgctacga < 2:232181‑M1/270‑198 (MQ=255) cgaggGTTTAAAGTTTCGGCAGATAGAAATAGGCCAGGAGTGGGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcgccttcttcagtctggctgggggtaaattcaggcgctttaatgccggtgattttcatcttcgggcgtgccgccggggcaaatggcgcgctacga < 2:132148‑M1/274‑198 (MQ=255) cgacgGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAgacggttatttttgtccagcacgtcaatttcgacttccagcatccgacgctggctcatgcccggtgcgtgagtgcccgcttcgccatgaccgtaatgcaggtcgccttcttcagtctggctgggggtaaattcaggcgctttaatgccggtgattttcatcttcgggcgtgccgccggggcaaatggcgcgctacga < 1:204821‑M1/274‑198 (MQ=255) cgGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCg < 2:383529/151‑1 (MQ=255) aGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAg > 1:269604/1‑137 (MQ=255) aTGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGcc < 2:269599/137‑1 (MQ=255) ggtgtACAACATGCGGTTGCGTGGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCGGATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTgg < 1:186778/272‑1 (MQ=255) tgtagaagagacaggttgcggtGAAGGGAACCTGTATAGCGAGGGTGATGAACATAACCCTCAGTCCGCTTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCGGATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATATCCGTCTGGCt < 1:717652/261‑1 (MQ=255) gcggttgcggtGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAgg > 2:58799/1‑154 (MQ=255) ggttgcggtGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCa > 1:240862/1‑170 (MQ=255) ttgcggtGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGAc < 1:58800/154‑1 (MQ=255) gcggtGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGc < 2:240857/170‑1 (MQ=255) cggtGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAg > 1:604216/1‑173 (MQ=255) cggtGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCACCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCGGATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAAACATCTGGCTGAACGCAACCgcgcgcgc > 1:455231/1‑274 (MQ=255) gAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCggg < 2:604207/173‑1 (MQ=255) | TGTGTCGAAACCAGCTCTCTTGCCTTTTGTTTTGATCTGGTTTGCCGCGGCAGCGTGGCGGAAGGTTGTAAACTGCACCTCGAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGATGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCGGATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGC > CP009273/2844117‑2844653 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |