New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2844390	30 (0.780)	10 (0.260)	5/310	NT	28.7%	coding (31/873 nt)	hypB	GTP hydrolase involved in nickel liganding into hydrogenases
	?	CP009273	= 2844630	20 (0.530)					coding (271/873 nt)	hypB	GTP hydrolase involved in nickel liganding into hydrogenases

TGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTGCGCAGTTATTGAAGGCGACCAGCAAACCGTGAACGATGCCGCACGCATTCGCGCTACCGGCACACCAGCGATTCAGGTGAACACCGGTAAAGGCTGCCATCTTGACGCACAGATGATTGC  >  CP009273/2844361‑2844880                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                            ggtgtACAACATGCGGTTGCGTGGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTgg                                                                                                                                                                                                                                                          <  1:186778/272‑1 (MQ=255)  tgtagaagagacaggttgcggtGAAGGGAACCTGTATAGCGAGGGTGATGAACATAACCCTCAGTCCGCTTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATATCCGTCTGGCt                                                                                                                                                                                                                                                        <  1:717652/261‑1 (MQ=255)                    cggtGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCACCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAAACATCTGGCTGAACGCAACCgcgcgcgc                                                                                                                                                                                                                                      >  1:455231/1‑274 (MQ=255)                                            gggTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGACCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGACG‑‑‑GATGCTGGAAGTGGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAAGGAAAACGCGCCCGTTTTGCTGCCGGCAAACAAATGGTGc                                                                                                                                                                                                             >  1:685730/1‑275 (MQ=255)                                                              tCATTCCGCGTTTCGTAGCGCGCCATTAGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCGGATGATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCa                                                                                                                                                                                             >  1:417550/1‑275 (MQ=255)                                                                aTTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCACA‑ACCGGGCTTGCAGccc                                                                                                                                                                                         >  1:267515/1‑274 (MQ=255)                                                                          tCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtggctgaacgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaccgtcgtc                                                                                                                                                                               <  1:19053‑M2/275‑79 (MQ=255)                                                                          tCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtgccttcaccgcaaccgcatgttgtacacatcgctccctcctggtctatttctatccgccgactctgtcaaccaccg                                                                                                                                                                                <  2:232181‑M2/274‑78 (MQ=255)                                                                          tCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtgccttcaccgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaccgtcg                                                                                                                                                                                <  1:204821‑M2/274‑78 (MQ=255)                                                                          tCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtgccttcaccgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaacccac                                                                                                                                                                                <  2:82108‑M2/274‑78 (MQ=255)                                                                          tCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtgccttcaccgcaaccgcatgttgtacacatcgcccactcctggcctatttctatctgccgaaactttaaaccctcg                                                                                                                                                                                <  2:132148‑M2/274‑78 (MQ=255)                                                                          tCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGCCATTACACCGCCTGAATTTACCCCCCGCCAGACTGAAGAAGGCGACCTGCCTTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCCTGAGCCAGCGTCG‑‑‑CCTGCTGGCAGTCCAACTTCACTTGCTGGACAAAACTAACCGTCTGGCTGAACACCACCGCTCCCCCTTTGCTGCACTCAAGCAACTGGAGCCCACANCT‑GTTGCCACCCCTTGTTcgtcg                                                                                                                                                                               >  2:416926/1‑270 (MQ=255)                                                                                               ggcggcACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCC‑‑‑GATGCTGGCAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCCCCCGCGCTTTTCTGCCCGCAAGCAACCGGTCCCCA‑ACCTGGCTTCACGCCCTGGTTCCGGTGACACCACCCCGCCGaacctaa                                                                                                                                                         >  2:600766/1‑269 (MQ=255)                                                                                                 cggcACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGATTTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGACGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGCGATGGACAAAAATCACCGTCTGGCTTAACGCAACCGCGCGAGCTTTGCTACCCGAAAGCAACTGGTGCCCA‑ACCTGGTTTACAGCCATGGGTCCGGCACAACCAcccgagtgccgggcac                                                                                                                                                        >  2:667907/1‑261 (MQ=255)                                                                                                     ccccccgaaCAGGAAAAAACCCGGCATTAAAGCCCCTAAATTGCCCCCCCGCCGGCCTGAAGAAGGCGGCCTGCATTACGGTCATGGCGAGGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtggctgaacgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaccgtcgtctgccacaatctgcagcatgtcaccatg                                                                                                                                                    >  2:19053‑M2/4‑170 (MQ=255)                                                                                                      cgggcgaagATGCAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtgccttcaccgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaccgtcgtctgccacaatctgcagcatgtcaccatg                                                                                                                                                   >  2:204817‑M2/5‑169 (MQ=255)                                                                                                          cgccgaggcnaaTCACCGGCCTTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACGCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGACCGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATgcgc                                                                                                                                              <  2:267510/265‑1 (MQ=255)                                                                                                            aaGATGAAAATCACCTGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGTATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtggctgaacgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaccgtcgtctgccacaatctgcagcatgtcaccatgacactgt                                                                                                                                             >  1:445754‑M2/1‑163 (MQ=255)                                                                                                                       cACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGTNAACCCTAACTCTCCTTAAAAACaacc                                                                                                                                 >  2:464832/1‑272 (MQ=255)                                                                                                                                                aCCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGTCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATGGACGTGCTGGACAANAATAACCGTCGGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTGCGCAGTTATTGAAGGCGa                                                                                                        <  1:667916/275‑1 (MQ=255)                                                                                                                                                       gccagACTGAAGAAGGCGACCTGCATT‑CGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTCTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACa                                                                                                                                    >  1:362067/1‑239 (MQ=255)                                                                                                                                                                       cGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtgccttcaccgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaccgtcgtctgccacaatctgcagcatgtcaccatgacactgtggacagcggcggacgcgctgggtcagtagcgtcacatactgttggcatgtttcacac                                                                                   >  1:232186‑M2/1‑104 (MQ=255)                                                                                                                                                                       cGACCTGCATTACGGGCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCtgccttcaccgcaaccgcatgttgtacacatcgctcactcctggtctatttctatccgccgaatctgtaaaccgtcgtctgccacaatctgcagcatgtcaccatgacactgtggacagcggcggacgcgctgggtcagtagcgtcacatactgttggcatgtttcacacc                                                                                  >  1:82109‑M2/1‑104 (MQ=255)                                                                                                                                                                                        aTGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTaaaa                                                                                                                                                                           >  2:102198/1‑168 (MQ=255)                                                                                                                                                                                            cGAAGCGGGCACTCACGCACCGTGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTgcg                                                                                                                        <  1:354476/215‑1 (MQ=255)                                                                                                                                                                                            cGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAaccac                                                                                                                                                                       <  1:102199/168‑1 (MQ=255)                                                                                                                                                                                             gAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAANCAACTGGTGCTCC‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTGCGCAGTTATTGAAGGCGACCAGCAAACCGTGAACGATGCCGCACGCATTCGCGCTACCgg                                                              <  1:600775/272‑1 (MQ=255)                                                                                                                                                                                                              aCCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTGCGCAGTTATTGAAGGCGACCAGCAAACCGTGAACGATGCCGCACGCATTCGCGCTACCGGca                                                            >  1:429255/1‑257 (MQ=255)                                                                                                                                                                                                                        aGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTcc                                                                                                                                                                                              >  2:450816/1‑117 (MQ=255)                                                                                                                                                                                                                            aGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGcc                                                                                                                                                                                          <  1:450823/117‑1 (MQ=255)                                                                                                                                                                                                                                                         gACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCNTGGTTCCGGTAAAACCACCATGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTGCGCAGTTATTGAAGGCGACCAGCAAACCGTGAACGATGCCGCACGCATTCGCGCTACCGGCACACCAGCGATTCAGGTGAACACCGGTAAAGGCTGCCATCTTGACGCACAGATGATTGc  <  1:542727/275‑1 (MQ=255)                                                                                                                                                                                                                                                         gACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGNTTCCAGCCNTGGTTCCGGTAACACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTGCGCAGTTATTGAAGGCGACCAGCAAACCGTGAACGATGCCGCACGCATTCGCGCTACCGGCACACCAGCGATTCAGGTGAACACCCGTAAAGGGTGCCATCTTGACGCACAGATGATTGc  <  1:464839/275‑1 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                            TGTGTACAACATGCGGTTGCGGTGAAGGCAACCTGTATATCGAGGGTGATGAACATAACCCTCATTCCGCGTTTCGTAGCGCGCCATTTGCCCCGGCGGCACGCCCGAAGATGAAAATCACCGGCATTAAAGCGCCTGAATTTACCCCCAGCCAGACTGAAGAAGGCGACCTGCATTACGGTCATGGCGAAGCGGGCACTCACGCACCGGGCATGAGCCAGCGTCG‑‑‑GATGCTGGAAGTCGAAATTGACGTGCTGGACAAAAATAACCGTCTGGCTGAACGCAACCGCGCGCGCTTTGCTGCCCGCAAGCAACTGGTGCTCA‑ACCTGGTTTCCAGCCCTGGTTCCGGTAAAACCACCCTGCTGACGGAAACCCTAATGCGCCTGAAAGACAGCGTTCCGTGCGCAGTTATTGAAGGCGACCAGCAAACCGTGAACGATGCCGCACGCATTCGCGCTACCGGCACACCAGCGATTCAGGTGAACACCGGTAAAGGCTGCCATCTTGACGCACAGATGATTGC  >  CP009273/2844361‑2844880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.