New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2877132	42 (1.090)	6 (0.160)	4/298	NT	14.1%	coding (366/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein
	?	CP009273	= 2877239	33 (0.900)					coding (259/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein

TTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGG  >  CP009273/2876860‑2877383                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                            ttAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtg                                                                                                                                                                                                                                                           <  1:88375‑M1/275‑3 (MQ=255)    aTCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTAc                                                                                                                                                                                                                                                        >  1:296313/1‑275 (MQ=255)                                                                                     acCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAt                                                                                                                                                                        >  1:83632/1‑274 (MQ=255)                                                                                     acCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGAGCCGCTTACCCCAGCCAACCGTTTTTCCATTGGCGTAACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATTTTCTGCGTGAt                                                                                                                                                                        >  1:349198/1‑274 (MQ=255)                                                                                                                        tgttACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGtt                                                                                                                                                                                 >  1:300963/1‑230 (MQ=255)                                                                                                                                gtgtTCCTCCACGTAAACCTCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTCCCCCAGCCAACAGATTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTATGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGaaa                                                                                                                             >  1:577425/1‑274 (MQ=255)                                                                                                                                gtgtTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCt                                                                                                                                                                                                                >  2:574513/1‑191 (MQ=255)                                                                                                                                    tcctccACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGa                                                                                                                                                                                                            <  1:574522/191‑1 (MQ=255)                                                                                                                                    tcctccACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACACCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTGGGTCTGCATACAGGGATGTTCTTCGTGATTAAGGTAGACCATATCTATCCAGTGCACGATAGnttgtttcaacaaga                                                                                                                        >  2:518069/1‑266 (MQ=255)                                                                                                                                                  cgcctatAAAACCACCACCAAAACCTGGTTCCTCATTCGCCTGGTTGAATAACGCCTTCGAAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCgg                                                                                                           <  2:296307/268‑1 (MQ=255)                                                                                                                                                                ccaccaAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCAt                                                                                                                                                                                                                                   >  2:4544/1‑140 (MQ=255)                                                                                                                                                                 caccaAAACCTGGCGCCTGATTCGCTTGGTTGAATAACGCAGTCGCAGTGCATCCACCACATAATGCTCCACCCTGCCCCGGTTGATTTGCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCACCAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACCCCTTTGGTGTGCATAAAGGAATGTTCTGCGTGATTACGGTCGAACATATCTATCCACGGCGCGATGAGTTGGTGAAACTCATTTGCAGTGAGGGGTTTCTTTATGCGactt                                                                                           >  2:209007/1‑272 (MQ=255)                                                                                                                                                                    caAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGa                                                                                                                                                                                                                               <  1:4544/140‑1 (MQ=255)                                                                                                                                                                        aCCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactg                                                                                                                                                                >  1:205134‑M1/1‑106 (MQ=255)                                                                                                                                                                        aCCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactg                                                                                                                                                                >  2:281572‑M1/1‑106 (MQ=255)                                                                                                                                                                        aCCTGGTGCCTGATTCGCCTGGCTGAATAACGCAATCGCAGTGCATCCACCACATAATGATTCACACTGCCCCGTATGTTTGACAAATCCACAATTCGTCGCGCCGCTTACCCCAGCCAACAATCTTTCCATTGCAGGCCCATCATTTGCTTTTACACCTTTTGTCTCCATAACGGGCTGTTCTGCGTGATTAAGGTACAACATATCTATCACCTTCACGAAAACTTAATGACACTAATCTACAGTGATCCGACTCATTCAGGGATGTCgctctt                                                                                    >  2:638137/1‑270 (MQ=255)                                                                                                                                                                            ggTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttgg                                                                                                                                                            <  2:205130‑M1/199‑98 (MQ=255)                                                                                                                                                                            ggTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttgg                                                                                                                                                            <  1:281577‑M1/199‑98 (MQ=255)                                                                                                                                                                             gTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAtt                                                                                                                                                                       >  1:564821/1‑187 (MQ=255)                                                                                                                                                                                 cTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                   <  2:564812/187‑1 (MQ=255)                                                                                                                                                                                                   tAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcag                                                                                                                                                                                                                              >  2:41824‑M1/1‑79 (MQ=255)                                                                                                                                                                                                       gCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGtggatagatatgttctaccttaatcacgcagaaca                                                                                                                                                                                                                          <  1:41824‑M1/110‑36 (MQ=255)                                                                                                                                                                                                        cAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAg                                                                                                                                                                >  2:301067/1‑167 (MQ=255)                                                                                                                                                                                                            cGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACa                                                                                                                                                            <  1:301073/167‑1 (MQ=255)                                                                                                                                                                                                                 tGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCt                                                                                                                                                                                                                >  2:91025/1‑110 (MQ=255)                                                                                                                                                                                                                 tGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGCTGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGAGATGAGTTGTTGACACTCATCTTCATTGAGCGGATTCATTATGCGCTTTAGAAATTCAACGTCCTCTTTTGCCGGGTCGATAATTTTccaacttcca                                           >  1:383098/1‑267 (MQ=255)                                                                                                                                                                                                                     tCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGa                                                                                                                                                                                                            <  1:91026/110‑1 (MQ=255)                                                                                                                                                                                                                       caccacATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGNCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTCGCCCAATGCAAACcag                                      <  1:518076/274‑1 (MQ=255)                                                                                                                                                                                                                                aTGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCtt                                                                                                                                                                                                      >  2:33575/1‑105 (MQ=255)                                                                                                                                                                                                                                    ttCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGt                                                                                                                                                                                                  <  1:33575/105‑1 (MQ=255)                                                                                                                                                                                                                                     tCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGc                       <  1:209011/275‑1 (MQ=255)                                                                                                                                                                                                                                      cACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGa                                                                                                                                                                                                                               >  1:652759/1‑74 (MQ=255)                                                                                                                                                                                                                                      cACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGt                                                                                                                                                                                                  >  1:33107/1‑103 (MQ=255)                                                                                                                                                                                                                                          cTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTca                                                                                                                                                                                                                           <  2:652750/74‑1 (MQ=255)                                                                                                                                                                                                                                          cTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGc                                                                                                                                                                                              <  2:33107/103‑1 (MQ=255)                                                                                                                                                                                                                                           tGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAg                                                                                                                  >  1:245216/1‑178 (MQ=255)                                                                                                                                                                                                                                           tGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTg                                                                                                                >  2:568747/1‑180 (MQ=255)                                                                                                                                                                                                                                             ccccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGc                                                                                                                                                                                                                                                  >  2:285633/1‑48 (MQ=255)                                                                                                                                                                                                                                             ccccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCtt                                                                                                                                                                                                      >  1:372321/1‑92 (MQ=255)                                                                                                                                                                                                                                               ccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAg                                                                                                              <  2:245211/178‑1 (MQ=255)                                                                                                                                                                                                                                               ccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCg                                                                                                            <  1:568756/180‑1 (MQ=255)                                                                                                                                                                                                                                                cGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGAtt                                                                                                                                                                       >  1:256335/1‑120 (MQ=255)                                                                                                                                                                                                                                                 ggTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAAc                                                                                                                                                                                                                                              <  1:285638/48‑1 (MQ=255)                                                                                                                                                                                                                                                 ggTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGt                                                                                                                                                                                                  <  2:372315/92‑1 (MQ=255)                                                                                                                                                                                                                                                    tgattgaCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                   <  2:256330/120‑1 (MQ=255)                                                                                                                                                                                                                                                        tgaCAAATGCACAATTCGTCGCGCCGCTTA‑CCCAGCCAACAGCTTTTCCATTGGAGTCAcat                                                                                                                                                                                                                        >  1:589834/1‑62 (MQ=255)                                                                                                                                                                                                                                                          aCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAANGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTTAAGCGGCCAGTTCCATATCGTCACgggg  <  1:503628/275‑1 (MQ=255)                                                                                                                                                                                                                                                            aaaTGCACAATTCGTCGCGCCGCTTA‑CCCAGCCAACAGTTTTTCCATTGGAGTCACATCAtt                                                                                                                                                                                                                    <  2:589825/62‑1 (MQ=255)                                                                                                                                                                                                                                                                        cgtcgCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATACTTTGCCCACTGCAAACCAGCAGTCCTaaat                           >  2:262075/1‑235 (MQ=255)                                                                                                                                                                                                                                                                           cgcgCCGtggatagatatgttctaccttaatcacgcagaacatccctttatgcaga                                                                                                                                                                                                            >  1:57583‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                                                            gcgcCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGc                       <  1:262080/236‑1 (MQ=255)                                                                                                                                                                                                                                                                               ccGtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaa                                                                                                                                                                                                        <  2:57583‑M1/56‑54 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                            TTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGG  >  CP009273/2876860‑2877383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.