New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2877132	42 (1.090)	6 (0.160)	4/298	NT	14.1%	coding (366/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein
	?	CP009273	= 2877239	33 (0.900)					coding (259/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein

GTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTACTGCAGTATAGCGATTGCAGATTTATGATTTGGACTTTCCCCCCGTTTCGCGGGCGTACAGGGATCCAGTTATCAATAAGCAAATTCATTTGTTCTCCTTCATA  >  CP009273/2876987‑2877512                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                  gtgtTCCTCCACGTAAACCTCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTCCCCCAGCCAACAGATTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTATGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGaaa                                                                                                                                                                                                                                                              >  1:577425/1‑274 (MQ=255)     tcctccACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACACCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTGGGTCTGCATACAGGGATGTTCTTCGTGATTAAGGTAGACCATATCTATCCAGTGCACGATAGnttgtttcaacaaga                                                                                                                                                                                                                                                         >  2:518069/1‑266 (MQ=255)                   cgcctatAAAACCACCACCAAAACCTGGTTCCTCATTCGCCTGGTTGAATAACGCCTTCGAAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCgg                                                                                                                                                                                                                                            <  2:296307/268‑1 (MQ=255)                                  caccaAAACCTGGCGCCTGATTCGCTTGGTTGAATAACGCAGTCGCAGTGCATCCACCACATAATGCTCCACCCTGCCCCGGTTGATTTGCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCACCAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACCCCTTTGGTGTGCATAAAGGAATGTTCTGCGTGATTACGGTCGAACATATCTATCCACGGCGCGATGAGTTGGTGAAACTCATTTGCAGTGAGGGGTTTCTTTATGCGactt                                                                                                                                                                                                                            >  2:209007/1‑272 (MQ=255)                                         aCCTGGTGCCTGATTCGCCTGGCTGAATAACGCAATCGCAGTGCATCCACCACATAATGATTCACACTGCCCCGTATGTTTGACAAATCCACAATTCGTCGCGCCGCTTACCCCAGCCAACAATCTTTCCATTGCAGGCCCATCATTTGCTTTTACACCTTTTGTCTCCATAACGGGCTGTTCTGCGTGATTAAGGTACAACATATCTATCACCTTCACGAAAACTTAATGACACTAATCTACAGTGATCCGACTCATTCAGGGATGTCgctctt                                                                                                                                                                                                                     >  2:638137/1‑270 (MQ=255)                                                                                  tGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGCTGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGAGATGAGTTGTTGACACTCATCTTCATTGAGCGGATTCATTATGCGCTTTAGAAATTCAACGTCCTCTTTTGCCGGGTCGATAATTTTccaacttcca                                                                                                                                                                            >  1:383098/1‑267 (MQ=255)                                                                                        caccacATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGNCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTCGCCCAATGCAAACcag                                                                                                                                                                       <  1:518076/274‑1 (MQ=255)                                                                                                      tCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGc                                                                                                                                                        <  1:209011/275‑1 (MQ=255)                                                                                                            tGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAg                                                                                                                                                                                                                                                   >  1:245216/1‑178 (MQ=255)                                                                                                            tGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTg                                                                                                                                                                                                                                                 >  2:568747/1‑180 (MQ=255)                                                                                                                ccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAg                                                                                                                                                                                                                                               <  2:245211/178‑1 (MQ=255)                                                                                                                ccGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCg                                                                                                                                                                                                                                             <  1:568756/180‑1 (MQ=255)                                                                                                                           aCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAANGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTTAAGCGGCCAGTTCCATATCGTCACgggg                                                                                                                                   <  1:503628/275‑1 (MQ=255)                                                                                                                                         cgtcgCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATACTTTGCCCACTGCAAACCAGCAGTCCTaaat                                                                                                                                                            >  2:262075/1‑235 (MQ=255)                                                                                                                                             gcgcCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGc                                                                                                                                                        <  1:262080/236‑1 (MQ=255)                                                                                                                                                             ccAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgcgttattcaaccaggcgaatcaggcacc                                                                                                                                                                             <  1:281577‑M2/199‑103 (MQ=255)                                                                                                                                                             ccAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgcgttattcaaccaggcgaatcaggcacc                                                                                                                                                                             <  2:205130‑M2/199‑103 (MQ=255)                                                                                                                                                                 cAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgcgttattcaaccaggcgaatcaggcaccaggt                                                                                                                                                                         >  2:281572‑M2/1‑93 (MQ=255)                                                                                                                                                                 cAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgcgttattcaaccaggcgaatcaggcaccaggt                                                                                                                                                                         >  1:205134‑M2/1‑93 (MQ=255)                                                                                                                                                                      tttCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGGTGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCtt                                                                                                                                                                                                                                                      >  2:615507/1‑117 (MQ=255)                                                                                                                                                                       ttCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCgg                                                                                                                                                                                                  >  1:297734/1‑168 (MQ=255)                                                                                                                                                                          cATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGGTGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGt                                                                                                                                                                                                                                                  <  1:615516/117‑1 (MQ=255)                                                                                                                                                                           aTTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCg                                                                                                                                                                                              <  2:297728/168‑1 (MQ=255)                                                                                                                                                                           aTTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTACTGCAGTATAGCGATTGCAGAtt                                                                                   >  1:182416/1‑275 (MQ=255)                                                                                                                                                                                    acaTCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGc                                                                                                                                                                                                                                              >  1:62294/1‑111 (MQ=255)                                                                                                                                                                                        catTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGAt                                                                                                                                                                                                                                          <  2:62293/111‑1 (MQ=255)                                                                                                                                                                                                         ttGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcgg                                                                                                                                                                                                                                                                                <  2:57583‑M2/56‑4 (MQ=255)                                                                                                                                                                                                             tCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcggcgcg                                                                                                                                                                                                                                                                            >  1:57583‑M2/1‑49 (MQ=255)                                                                                                                                                                                                               aagagataGGGATGTTTTCATTANTTAAGGTAGAACATATCTATCCATGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTACTGCAGTATAGCGATTGCAGATTTATGATTTGGACTTTCCCCCCGTTTCGCGGGCGTa                                                <  2:428720/267‑1 (MQ=255)                                                                                                                                                                                                                 cATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACAAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGcc                                                                                                                     >  1:59646/1‑203 (MQ=255)                                                                                                                                                                                                                           tGTTCTGCGTGATTAAGGTAGAACATATCTATCCAcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgc                                                                                                                                                                                                        <  1:41824‑M2/110‑76 (MQ=255)                                                                                                                                                                                                                               cTGCGTGATTAAGGTAGAACATATCTATCCAcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgcgtta                                                                                                                                                                                                    >  2:41824‑M2/1‑31 (MQ=255)                                                                                                                                                                                                                                  cGTGTTTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCaaa                                                                                                                                                                           >  2:714805/1‑132 (MQ=255)                                                                                                                                                                                                                                   gTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTACTGCAGTATAGCGATTGCAGATTTATGATTTGGACTTTCCCCCCGTTTCGCggg                                                    >  1:428727/1‑250 (MQ=255)                                                                                                                                                                                                                                      tttAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACcag                                                                                                                                                                       <  1:714815/131‑1 (MQ=255)                                                                                                                                                                                                                                           ggTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGAt                                                                                                                                                                                                                                          <  1:669102/60‑1 (MQ=255)                                                                                                                                                                                                                                                aaCATATCTATCCACGGCGGGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGAGCGCTAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTACTGCAGTATAGCGATTGCAGATTTATGATTTGGACTTTCCCCCCGTTTCGCGGGCGTACAGGGAACCAGTTATAAATAAGCAAATACAttt               >  1:568318/1‑274 (MQ=255)                                                                                                                                                                                                                                                aaCATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCgg                                                                                                                                                                                                  >  1:713321/1‑95 (MQ=255)                                                                                                                                                                                                                                                    tatctatcCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCg                                                                                                                                                                                              <  2:713311/95‑1 (MQ=255)                                                                                                                                                                                                                                                     atctatcCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCa                                                                                                                                                                                                                   >  1:333400/1‑73 (MQ=255)                                                                                                                                                                                                                                                     atctatcCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTcc                                                                                                                                                 >  2:684436/1‑139 (MQ=255)                                                                                                                                                                                                                                                         atcCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGt                                                                                                                                                                                                               <  2:333394/73‑1 (MQ=255)                                                                                                                                                                                                                                                         atcCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCatat                                                                                                                                             <  1:684445/139‑1 (MQ=255)                                                                                                                                                                                                                                                            cAcggcgcgacgaattgtgcatttgtcaatcaaccggggcagggtgaagcattatgtggtggatgcactgcgattgcgttattcaaccaggcgaatcaggcaccaggttttggtggtggttttaaaagcggtttacgtggaggaacacctgtaacaacgttcgtacgtgggatcgatcttcgttcaacggtgttactcaatgtcctcacattacctcgtcttcaaaaacaatttcctaatgaatcacatacggaaaaccaacctacctggattaa  <  1:88375‑M2/275‑274 (MQ=255)                                                                                                                                                                                                                                                             aCGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGATAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTACTGCAGTATAGCGATTGCAGATTTATGATTTGGACTTTCCCCCCGTTTCGCGGGCGTACAGGGATCCAGTTATAAATAAACAAATTCATTTGTTCTCCTACata  >  1:196850/1‑274 (MQ=255)                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                  GTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTACTGCAGTATAGCGATTGCAGATTTATGATTTGGACTTTCCCCCCGTTTCGCGGGCGTACAGGGATCCAGTTATCAATAAGCAAATTCATTTGTTCTCCTTCATA  >  CP009273/2876987‑2877512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.