New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2985582 =	39 (1.010)	4 (0.110)	4/298	NT	6.2%	coding (130/1377 nt)	ygeH	putative transcriptional regulator
	?	CP009273	2985987 =	83 (2.280)					coding (535/1377 nt)	ygeH	putative transcriptional regulator

AACCATAGATATGTCAAATGTAATTTCCTGTAGCGTTAATGACACATAAATATGAATAGCCATAATTTCTATTGCTTAAGCAGGATGCAAGAAACCAATTTTTTCATAGAGGTTAACTAATGGACTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAAAACTAAAATTAATGAAGATAATACTTCAGACTATTCCATAGCTATATTCCCTTTCACTACTTCA  >  CP009273/2985334‑2985836                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                               cacactAGATATGTCAAAGTTAATTTCCTTTAGCGTTAATGACACATAAATATGAATAGCCATAATTTCTATTGCTTAAGCAGGATGCAAGAAACCAATTTTTTCATAGAGGTTAACTAATGGACTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTg                                                                                                                                                                                                                                      <  2:164673/270‑1 (MQ=255)                                                                                              aCCAATTTTTTCATAGAGGTTAACTAATGGACTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCTCTGCATTTTTg                                                                                                                                           >  1:119291/1‑273 (MQ=255)                                                                                                                        aTGGACTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCAtgttgt                                                                                                                                                                                                                                          >  1:257136/1‑152 (MQ=255)                                                                                                                          ggACTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGaa                                                                                                                                         >  2:151920/1‑247 (MQ=255)                                                                                                                            aCTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTg                                                                                                                                                                                                                                      <  2:257131/152‑1 (MQ=255)                                                                                                                              ttAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGaaaaaa                                                                                                                                     <  1:151923/247‑1 (MQ=255)                                                                                                                                aGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGa                                                                                                                                                                                                                                 >  1:427155/1‑153 (MQ=255)                                                                                                                                aGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGatcatc                                                                                                                                                                                                                       >  1:101696/1‑163 (MQ=255)                                                                                                                                aGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGatcatc                                                                                                                                                                                                                       >  1:695975/1‑163 (MQ=255)                                                                                                                                    aataaatTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATg                                                                                                                                                                                                                             <  2:427148/153‑1 (MQ=255)                                                                                                                                    aataaatTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAAt                                                                                                                                                                                                                   <  2:101695/163‑1 (MQ=255)                                                                                                                                    aataaatTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAAt                                                                                                                                                                                                                   <  2:695966/163‑1 (MQ=255)                                                                                                                                                       ttCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTAt                                                                                                                                                                                                             >  1:603127/1‑150 (MQ=255)                                                                                                                                                           tGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGaa                                                                                                                                                                                                         <  2:603118/150‑1 (MQ=255)                                                                                                                                                             atgaggaaaaggtttttagcgtcgatcaactcaatgtataaagtgttcactgcattattctggtttattcttcctgtaacgaaataatctggCTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATc                                                                                                                                                                                                                  <  1:590083‑M1/47‑1 (MQ=255)                                                                                                                                                             aGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGa                                                                                                                                                                                                                                 >  2:303756/1‑124 (MQ=255)                                                                                                                                                             aGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTAt                                                                                                                                                                                                             >  1:540924/1‑144 (MQ=255)                                                                                                                                                                 ggaaaaggtttttagcgtcgatcaactcaatgtataaagtgttcactgcattattctggtttattcttcctgtaacgaaataatctggCTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTa                                                                                                                                                                                                              >  2:590074‑M1/89‑139 (MQ=255)                                                                                                                                                                 aTTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATg                                                                                                                                                                                                                             <  1:303762/124‑1 (MQ=255)                                                                                                                                                                 aTTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGaa                                                                                                                                                                                                         <  2:540916/144‑1 (MQ=255)                                                                                                                                                                           aCGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTa                                                                                                                                                                                                                                         >  2:72483/1‑102 (MQ=255)                                                                                                                                                                               aaGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGa                                                                                                                                                                                                                                     <  1:72484/102‑1 (MQ=255)                                                                                                                                                                                             aCTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGa                                                                                                                                                                                                                                 >  1:161282/1‑92 (MQ=255)                                                                                                                                                                                             aCTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAAt                                                                                                                                                                                                                   >  2:408075/1‑106 (MQ=255)                                                                                                                                                                                                 aaGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATg                                                                                                                                                                                                                             <  2:161279/92‑1 (MQ=255)                                                                                                                                                                                                 aaGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGt                                                                                                                                                                                                               <  1:408082/106‑1 (MQ=255)                                                                                                                                                                                                                 cattattctggtttattcttcctgtaacgaaataatctggCTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGa                                                                                                                                                                                                                            <  1:32850‑M1/37‑1 (MQ=255)                                                                                                                                                                                                                     attctggtttattcttcctgtaacgaaataatctggCTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGatcat                                                                                                                                                                                                                        >  2:32850‑M1/37‑77 (MQ=255)                                                                                                                                                                                                                         cacaGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATc                                                                                                                                                                                                                  >  1:434813/1‑79 (MQ=255)                                                                                                                                                                                                                         cacaGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGAc                                                                                                                                                                           >  1:621494/1‑118 (MQ=255)                                                                                                                                                                                                                         cacaGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGa                                                                                                                                                                       >  1:467552/1‑122 (MQ=255)                                                                                                                                                                                                                         cacaGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTGGAAAAAATTGGCTATGATCGt                                                                                                                       >  2:710876/1‑170 (MQ=255)                                                                                                                                                                                                                          acaGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGa                                                                                                                                                                                                                                 >  1:277922/1‑63 (MQ=255)                                                                                                                                                                                                                             gAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTa                                                                                                                                                                                                              <  2:434806/79‑1 (MQ=255)                                                                                                                                                                                                                             gAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGa                                                                                                                                                                       <  2:621485/118‑1 (MQ=255)                                                                                                                                                                                                                             gAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTa                                                                                                                                                                   <  2:467545/122‑1 (MQ=255)                                                                                                                                                                                                                              aaaGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATg                                                                                                                                                                                                                             <  2:277917/63‑1 (MQ=255)                                                                                                                                                                                                                                      aGGTGTATTGATTGTATTACTTGAATTCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGGCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAAAACTAAAATTAATGAAGATAATACTTCAGACTATTCCATAGCTATATTCCCTTTCACTACTTCa  <  2:142828/274‑1 (MQ=255)                                                                                                                                                                                                                                      aGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAAAACTAAAATTAATGAAGATAATACTTCAGACTATTCCATAGATATATTCCATTTCACTACTTCa  >  1:142829/1‑274 (MQ=255)                                                                                                                                                                                                                                        gtgtATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAAtatta                                                                                                                                                                                                 >  2:339991/1‑81 (MQ=255)                                                                                                                                                                                                                                            aTTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGt                                                                                                                                                                                             <  1:339997/81‑1 (MQ=255)                                                                                                                                                                                                                                                  aGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTAt                                                                                                                                                                                                             >  2:160360/1‑59 (MQ=255)                                                                                                                                                                                                                                                   gTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTAt                                                                                                                                                                                                             >  1:2063/1‑58 (MQ=255)                                                                                                                                                                                                                                                     aTTACTTGAATCCGCTGGTCATGTTGTACTGAAAGata                                                                                                                                                                                                                               >  2:485047/1‑38 (MQ=255)                                                                                                                                                                                                                                                     aTTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGatcatc                                                                                                                                                                                                                       >  1:45844/1‑46 (MQ=255)                                                                                                                                                                                                                                                     aTTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGAc                                                                                                                                                                           >  2:506245/1‑90 (MQ=255)                                                                                                                                                                                                                                                     aTTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAAAACTAAAATTAATGAAg                                                 >  2:636593/1‑212 (MQ=255)                                                                                                                                                                                                                                                      ttACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGaa                                                                                                                                                                                                         <  1:160363/59‑1 (MQ=255)                                                                                                                                                                                                                                                       tACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGaa                                                                                                                                                                                                         <  2:2063/58‑1 (MQ=255)                                                                                                                                                                                                                                                         cTTGAATCTGCTGTGCGTGTTGTACTGAAAGATATGat                                                                                                                                                                                                                           <  1:485054/38‑1 (MQ=255)                                                                                                                                                                                                                                                         CTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAAt                                                                                                                                                                                                                   >  2:45844‑M1/1‑46 (MQ=255)                                                                                                                                                                                                                                                         CTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGa                                                                                                                                                                       >  1:506252‑M1/1‑90 (MQ=255)                                                                                                                                                                                                                                                         CTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAAAACTAAAATTAATGAAGATAATACTTCAGACTAtt                               <  2:148440‑M1/226‑1 (MQ=255)                                                                                                                                                                                                                                                         CTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAAGATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAAAACTAAAATTAATGAAGataa                                             >  1:636602‑M1/1‑212 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                               AACCATAGATATGTCAAATGTAATTTCCTGTAGCGTTAATGACACATAAATATGAATAGCCATAATTTCTATTGCTTAAGCAGGATGCAAGAAACCAATTTTTTCATAGAGGTTAACTAATGGACTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAATGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAGATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGCATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAAAACTAAAATTAATGAAGATAATACTTCAGACTATTCCATAGCTATATTCCCTTTCACTACTTCA  >  CP009273/2985334‑2985836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.