New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3128772	24 (0.620)	13 (0.360)	6/296	NT	35.3%	coding (959/1500 nt)	pitB	phosphate transporter
	?	CP009273	= 3128845	25 (0.690)					coding (886/1500 nt)	pitB	phosphate transporter

GTCATCGCTACACGACGCCAGCCAATCATGGTGCCAATGCCGAGCGCCAGTGCTACCGCCATGATGATCCACACCGGAGCGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAG  >  CP009273/3128508‑3129016                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     gTCATCGCTACACGACGCCAGCCAATCATGGTGCAAATGCCGAGCGCCAGTGCTACCGCCATGATGATCCACACCGGAGCGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAAcgcg                                                                                                                                                                                                                                            <  1:250867/275‑1 (MQ=255)                               gTGCCAATGCCGAGCGCCAGTGCTACCGCCATGATGATCCACACCGGAGCGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGGAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATg                                                                                                                                                                                                              >  1:266487/1‑275 (MQ=255)                                                       taagatatgatggtcaaaATCGGAATGTACTCAATGGTGCTTAACANTTCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTGACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctattgcgc                                                                                                                                                                                      <  2:441850‑M1/269‑65 (MQ=255)                                                       aCCGCCATGATGATCCACACCGGAGCGTATTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGt                                                                                                                                                                                      <  1:189633/275‑1 (MQ=255)                                                             atgatgATCCACACCGGAGCGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAATGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctattgcgcgcgtta                                                                                                                                                                                >  1:441857‑M1/1‑205 (MQ=255)                                                                                cGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCAATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTAGTTGCCGGATGACAGGGAAAATCGGTTAATTGCGTGCCATCAGTCGATGATGCCGGCaa                                                                                                                                                              >  2:216501/1‑274 (MQ=255)                                                                                                        cGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCgg                                                                                                                                                                                                                 >  2:606105/1‑199 (MQ=255)                                                                                                           tGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctatt                                                                                                                                                                                          >  1:352213‑M1/1‑159 (MQ=255)                                                                                                            gCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGa                                                                                                                                                                                                             <  1:606114/199‑1 (MQ=255)                                                                                                             cGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTaa                                                                                                                                                                                                                                                >  1:174825/1‑163 (MQ=255)                                                                                                             cGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCgg                                                                                                                                <  1:89136/275‑1 (MQ=255)                                                                                                                 gTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAAcgcg                                                                                                                                                                                                                                            <  2:174822/163‑1 (MQ=255)                                                                                                                                tCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGacggatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctattgcg                                                                                                                                                                                       <  1:428733‑M1/201‑64 (MQ=255)                                                                                                                                                             ttCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGt                                                                                                                                                                                      >  1:92413/1‑173 (MQ=255)                                                                                                                                                             ttCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGt                                                                                                                                                                                      >  1:22345/1‑173 (MQ=255)                                                                                                                                                                 cTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCa                                                                                                                                                                                  <  2:22345/173‑1 (MQ=255)                                                                                                                                                                 cTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCa                                                                                                                                                                                  <  2:92412/173‑1 (MQ=255)                                                                                                                                                                     cTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGt                                                                                                                                                                                      >  1:269340/1‑165 (MQ=255)                                                                                                                                                                      ttCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCGTCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAgtg                                                                                                     >  1:293972/1‑245 (MQ=255)                                                                                                                                                                         gcgGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCa                                                                                                                                                                                  <  2:269335/165‑1 (MQ=255)                                                                                                                                                                          cgGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCGTCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCg                                                                                                 <  2:293966/245‑1 (MQ=255)                                                                                                                                                                                        aTGCACAGCNTAAGGCGGCGCCGCTGGCTGCGCTGACTTCCGCTTAACGGCGCGTAACTTTCCATATTGCCTGGAAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGAAAGTGAAACTCTGTTACGTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGa                                                     <  2:266482/275‑1 (MQ=255)                                                                                                                                                                                         tGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCAGCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGa                                                     <  1:710925/274‑1 (MQ=255)                                                                                                                                                                                                            cAGCTGGCTGCGCTGACGCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgctgctagtgcg                                                                                                                                                                                       <  1:715127‑M1/125‑64 (MQ=255)                                                                                                                                                                                                                                cGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGATGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGAACGGGTAAGTTCATAGCCGGACGGAATCATATTGACGAAGAAGCCCACAGGGGCAAGcccc             >  2:40862/1‑275 (MQ=255)                                                                                                                                                                                                                                     aaCGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctatt                                                                                                                                                                                          >  1:483650‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                                     aaCGGCTCGTAACTTGCCATACTAACTGACAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTNCGAAGGTGGTAACGGCATcgcg                                                                             >  1:497703/1‑206 (MQ=255)                                                                                                                                                                                                                                         gCTCGTAACTTTCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctattgcgc                                                                                                                                                                                      <  2:483643‑M1/97‑65 (MQ=255)                                                                                                                                                                                                                                           tCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAg  <  1:40862/275‑1 (MQ=255)                                                                                                                                                                                                                                           tCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCAGATTGAAGACGAAGCCAGCAGGGGCAACCACCGCCAGTAcccg  >  2:213883/1‑273 (MQ=255)                                                                                                                                                                                                                                                   ttCCGTATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctat                                                                                                                                                                                           >  1:105266‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                                                   ttCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctat                                                                                                                                                                                           >  2:338543‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                                                   ttCCATATTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctat                                                                                                                                                                                           >  1:145888‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                                                       gtattGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctattgcg                                                                                                                                                                                       <  2:105265‑M1/81‑64 (MQ=255)                                                                                                                                                                                                                                                       atatTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctattgcg                                                                                                                                                                                       <  2:145887‑M1/82‑64 (MQ=255)                                                                                                                                                                                                                                                       atatTGCCTGGCAGCATCGactgatggcacgcaagtaacagagtttcactgtcatccggcaaatacctttgatgctattgcg                                                                                                                                                                                       <  1:338549‑M1/82‑64 (MQ=255)                                                                                                                                                                                                                                                                 gcagcaTCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCg                                                                                                                                                                                       <  2:426666/72‑1 (MQ=255)                                                                                                                                                                                                                                                                       tCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGa                                                                                                                      >  1:187013/1‑131 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     GTCATCGCTACACGACGCCAGCCAATCATGGTGCCAATGCCGAGCGCCAGTGCTACCGCCATGATGATCCACACCGGAGCGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAG  >  CP009273/3128508‑3129016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.