New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3128772	24 (0.620)	13 (0.360)	6/296	NT	35.3%	coding (959/1500 nt)	pitB	phosphate transporter
	?	CP009273	= 3128845	25 (0.690)					coding (886/1500 nt)	pitB	phosphate transporter

CGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAGCATTACCAGGCCGATCCCTTTTTGTCCGTCGTTCGCGCCGTGCGAAAACGCCACGCCC  >  CP009273/3128587‑3129074                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                      cGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCAATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTAGTTGCCGGATGACAGGGAAAATCGGTTAATTGCGTGCCATCAGTCGATGATGCCGGCaa                                                                                                                                                                                                                        >  2:216501/1‑274 (MQ=255)                              cGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCgg                                                                                                                                                                                          <  1:89136/275‑1 (MQ=255)                                                                                       ttCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCGTCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAgtg                                                                                                                                                               >  1:293972/1‑245 (MQ=255)                                                                                           cgGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCGTCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCg                                                                                                                                                           <  2:293966/245‑1 (MQ=255)                                                                                                         aTGCACAGCNTAAGGCGGCGCCGCTGGCTGCGCTGACTTCCGCTTAACGGCGCGTAACTTTCCATATTGCCTGGAAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGAAAGTGAAACTCTGTTACGTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGa                                                                                                               <  2:266482/275‑1 (MQ=255)                                                                                                          tGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCAGCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGa                                                                                                               <  1:710925/274‑1 (MQ=255)                                                                                                                                                 cGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGATGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGAACGGGTAAGTTCATAGCCGGACGGAATCATATTGACGAAGAAGCCCACAGGGGCAAGcccc                                                                       >  2:40862/1‑275 (MQ=255)                                                                                                                                                      aaCGGCTCGTAACTTGCCATACTAACTGACAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTNCGAAGGTGGTAACGGCATcgcg                                                                                                                                       >  1:497703/1‑206 (MQ=255)                                                                                                                                                            tCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAg                                                            <  1:40862/275‑1 (MQ=255)                                                                                                                                                            tCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCAGATTGAAGACGAAGCCAGCAGGGGCAACCACCGCCAGTAcccg                                                            >  2:213883/1‑273 (MQ=255)                                                                                                                                                                                        tCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGa                                                                                                                                                                                >  1:187013/1‑131 (MQ=255)                                                                                                                                                                                            tttAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCt                                                                                                                                                                            <  2:187010/131‑1 (MQ=255)                                                                                                                                                                                              tAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaaagttacgagccattaagcgtgagtcagcgcagccagctgcgccgcattatgctgtgcatctctgatacctccgcgaagctagcgaaactgccaggcgtcagtaaagaagaccagaacctgctgaaaaaacttcgcagcgatatgttaagcaccattgagtacgctccggtgtggatcatcat                          >  1:441857‑M2/1‑70 (MQ=255)                                                                                                                                                                                                    gcgcAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaaagttacgagccgttaagcgtgagtcagcgcagccagctgcgccgcattatgctgtgcatctctgatacctccgcgaagctagcgaaactgccaggcgtcagtcaagaagaccagaacctgctgaaaaaacttcgcagcgaantgttaagcaccattgagtacattccgattttgaccatcatatctta                    <  2:441850‑M2/275‑212 (MQ=255)                                                                                                                                                                                                    gcgcAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaaagttacgagc                                                                                                                                                                                                      <  2:483643‑M2/97‑34 (MQ=255)                                                                                                                                                                                                     cgcACTAGCAGCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaaagttacgagccgttaagcgtgcgtcagcgcagccagctg                                                                                                                                                                         <  1:715127‑M2/125‑63 (MQ=255)                                                                                                                                                                                                     cgcAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCCGTcgatgctgccaggcaatatggaaagttacgagccgttaagcgtgagtcagcgcagccagctgcgccgcattatgctgtgcatctctgatacctccgcgaagctagcgaaactgccaggcgtcagtaaagaagaccaga                                                                                             <  1:428733‑M2/201‑139 (MQ=255)                                                                                                                                                                                                     cgcAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatat                                                                                                                                                                                                                    <  1:338549‑M2/82‑20 (MQ=255)                                                                                                                                                                                                     cgcAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatat                                                                                                                                                                                                                    <  2:145887‑M2/82‑20 (MQ=255)                                                                                                                                                                                                     cgcAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatac                                                                                                                                                                                                                    <  2:105265‑M2/82‑20 (MQ=255)                                                                                                                                                                                                     cgcAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGcgggtacgg                                                                                                                                >  2:31234/1‑166 (MQ=255)                                                                                                                                                                                                        aaTAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaaagttacgagccgttaagcgtgagtcagcgcagccagctgcgccgcattatgctgtgcatctctgatacctccgcgaagctagcgaaactgccaggcgtcagtaaagaagaccagaacctgctgaaaaaacttcgca                                                                        >  1:352213‑M2/1‑60 (MQ=255)                                                                                                                                                                                                        aaTAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaaagttacgagccgtt                                                                                                                                                                                                  >  1:483650‑M2/1‑60 (MQ=255)                                                                                                                                                                                                         aTAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaa                                                                                                                                                                                                                >  1:145888‑M2/1‑59 (MQ=255)                                                                                                                                                                                                         aTAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatatggaa                                                                                                                                                                                                                >  2:338543‑M2/1‑59 (MQ=255)                                                                                                                                                                                                         aTAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTcgatgctgccaggcaatacggaa                                                                                                                                                                                                                >  1:105266‑M2/1‑59 (MQ=255)                                                                                                                                                                                                         aTAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTaa                                                                                                                            <  1:31234/166‑1 (MQ=255)                                                                                                                                                                                                                  aaGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGTGCAATcc                                                                         >  1:220934/1‑208 (MQ=255)                                                                                                                                                                                                                  aaGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAGCAATACCAGGCCGATCCCTTTTTGTCCGTCGTTCGCGCCGTGCGAAAacgccac      >  2:263145/1‑275 (MQ=255)                                                                                                                                                                                                                      tATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAGCATTACCAGGCCGATCCCTTTTTGTCCGTCGTTCGCGCCGTGCGAAAACGCCACGccc  <  1:216505/275‑1 (MQ=255)                                                                                                                                                                                                                             cGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGa                                                                                                                                                                                >  2:235255/1‑94 (MQ=255)                                                                                                                                                                                                                                 tGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCt                                                                                                                                                                            <  1:235260/94‑1 (MQ=255)                                                                                                                                                                                                                                                 ttACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGc                                                                                                                                             >  1:106122/1‑109 (MQ=255)                                                                                                                                                                                                                                                     ttGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATcg                                                                                                                                         <  2:106121/109‑1 (MQ=255)                                                                                                                                                                                                                                                      tGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGa                                                                                                                                                                                >  1:318339/1‑69 (MQ=255)                                                                                                                                                                                                                                                         gTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCa                                                                                                                                                                      >  1:314310/1‑76 (MQ=255)                                                                                                                                                                                                                                                          tGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCt                                                                                                                                                                            <  2:318333/69‑1 (MQ=255)                                                                                                                                                                                                                                                             cATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTa                                                                                                                                                                  <  2:314304/76‑1 (MQ=255)                                                                                                                                                                                                                                                                 aGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTg                                                                                                                                                     >  2:239992/1‑85 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                      CGTACTCAATGGTGCTTAACATATCGCTGCGAAGTTTTTTCAGCAGGTTCTGGTCTTCTTTACTGACGCCTGGCAGTTTCGCTAGCTTCGCGGAGGTATCAGAGATGCACAGCATAATGCGGCGCAGCTGGCTGCGCTGACTCACGCTTAACGGCTCGTAACTTTCCATATTGCCTGGCAGCATCGTTTTAACGCGCGCAATAGCATCAAAGGTATTTGCCGGATGACAGTGAAACTCTGTTACTTGCGTGCCATCAGTCGATGCTGCAGGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAGTTCAGGATGCTGTTGCAGGTAGTGTTCGAAGTTGGTAACGGCATCGCGGGTACGGGTAATTTCATAGCCGGACGCATTCATATTGACGACGAAGCCAGCAGGGGCAATCCCCACCAGTACCAGCATTACCAGGCCGATCCCTTTTTGTCCGTCGTTCGCGCCGTGCGAAAACGCCACGCCC  >  CP009273/3128587‑3129074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.